PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2192550.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 357aa    MW: 40475.7 Da    PI: 7.6187
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2192550.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.95.1e-1544133299
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      +k + ps+v+   +l+l+ kf++ h  +k  ++ +tledesg+ +e k+i     +++ l++GW +F  a++L e D+++F+l++ s+f  +v 
  Lj4g3v2192550.1  44 LKCMHPSHVSGAFWLSLSTKFCQMHL-PK-ADTIITLEDESGELYETKYIA----DKVALSGGWMRFSIAHNLHEMDVLIFHLVKPSKF--KVY 129
                      58899*****************8884.44.4569***************43....3467************************998888..888 PP

                      EE-S CS
               B3  96 vfrk 99 
                      ++r+
  Lj4g3v2192550.1 130 IVRS 133
                      8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.0E-2036134IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-2136133IPR015300DNA-binding pseudobarrel domain
CDDcd100177.56E-2241132No hitNo description
PROSITE profilePS5086310.96943134IPR003340B3 DNA binding domain
SMARTSM010192.1E-1543134IPR003340B3 DNA binding domain
PfamPF023623.2E-1244133IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MSAINRNPPK KRKSSTFNYE AQSAALQRAK EIQAKLSPEF PSLLKCMHPS HVSGAFWLSL  60
STKFCQMHLP KADTIITLED ESGELYETKY IADKVALSGG WMRFSIAHNL HEMDVLIFHL  120
VKPSKFKVYI VRSQGSDEVD GALGMLKLDK CRKTNDEVSS VLDTTRGNDP RMIFGDNLSQ  180
SDQLENESKD LFSETSESVI NSFEQVTGIE NFIIMVNGLV IYSELSERLW VKYYELCRSQ  240
RCFLHDNLVS GLNSKLVVGM ITETINIADA IKASKVTTSM DNFVTWDKTL KAFEGMGMNV  300
SFLITQLDHL MKLALKLKRH KEARLERLHA NEKLKALEAR VLEVKKTIRG LDEEIAM
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2192550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020237115.11e-160B3 domain-containing protein Os01g0234100 isoform X4
TrEMBLA0A151RRB31e-158A0A151RRB3_CAJCA; B3 domain-containing protein Os01g0234100 family (Fragment)
STRINGGLYMA01G45623.11e-148(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.16e-36B3 family protein