PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v2137100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | HB-PHD | ||||||||
Protein Properties | Length: 687aa MW: 77821.3 Da PI: 9.4846 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 32.9 | 1.1e-10 | 469 | 516 | 6 | 53 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++ ++ +e+L ++F++n p ++ re L+k+lgL+ ++V+ WF+N R+ Lj4g3v2137100.1 469 RIPHNAVERLRQVFAENELPPRSIRESLSKELGLEIQKVSKWFKNARY 516 5667889****************************************8 PP | |||||||
2 | PHD | 37.6 | 5e-13 | 218 | 272 | 2 | 51 |
BTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 2 CkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 C+ C+ + ++ ++lCd +C+++fH+kC++++l+se++peg wlC+ C +k Lj4g3v2137100.1 218 CAKCKLreDLPDNGIILCDgTCNRAFHQKCHDPPLDSEDIPEGdqGWLCKFCACK 272 8889885444599******56*******************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 7.8E-12 | 210 | 273 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57903 | 8.06E-14 | 212 | 274 | IPR011011 | Zinc finger, FYVE/PHD-type |
PROSITE profile | PS50016 | 10.149 | 215 | 272 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 4.2E-9 | 217 | 270 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15504 | 7.01E-28 | 217 | 269 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 218 | 269 | IPR019786 | Zinc finger, PHD-type, conserved site |
Pfam | PF00628 | 1.7E-10 | 218 | 271 | IPR019787 | Zinc finger, PHD-finger |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 454 | 515 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.22E-10 | 460 | 524 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.212 | 461 | 521 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.6E-8 | 463 | 525 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.05E-8 | 464 | 516 | No hit | No description |
Pfam | PF00046 | 3.2E-8 | 469 | 516 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 687 aa Download sequence Send to blast |
MRYSDKKLNR GGPKKSGLLK ALKKCQGKKH KMKSRSRTNS VGTNISRKRV TDSSLKGPHK 60 DSSNKKLVSR QKLHKTDRKS SQKSSSKLQG KKVSLGSRKE GKDADGEVKL QKLKRRRKKK 120 RQKNNVDVDE ASRLQRRTRY LLIKMKLEQN LIDAYSGEGW KGQSREKIRP EKELQRARKQ 180 ILKCKLGIRD AIHQLDSLSS SSSIEDSVID PDHEHILCAK CKLREDLPDN GIILCDGTCN 240 RAFHQKCHDP PLDSEDIPEG DQGWLCKFCA CKMEILGAMN AHLGTRFSLH SDWQDVFKEE 300 ASLPDGDVAS LNPEAEWPSD DSEDDDYNPE RAEDSRNINT EESDHNASDD SSSSTSLCSS 360 DSECSPLDDG VNHEHFSVNS SVDSDESDEK ECGRRQRKAV DYKKLYDEMF GKDALACEQV 420 SEDEDWGECD AVDTLMTLHE SENKNPNNGH NSKTRGGSLG VNIRRPNFRI PHNAVERLRQ 480 VFAENELPPR SIRESLSKEL GLEIQKVSKW FKNARYTALK TRKLQAGSDQ LQNITSKSSR 540 LLNQEKADPL ESKTSLTITH SPKNVKNATD GKKIQPSSSP LQGTQRKLSS TQPRENGNKD 600 FMEDSDDVSL KNLLKKRKRK VNFTSEGDYQ AAEKEFERLS RLKIKLDSMK QKLTGIQKQR 660 VKDSVEPHSN EPSIIYVPIA VLREKVE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 120 | RRRKKKR |
2 | 115 | 120 | RRKKKR |
3 | 116 | 123 | RKKKRQKN |
4 | 609 | 617 | LKNLLKKRK |
5 | 614 | 619 | KKRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v2137100.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027331993.1 | 0.0 | pathogenesis-related homeodomain protein-like | ||||
Refseq | XP_027331995.1 | 0.0 | pathogenesis-related homeodomain protein-like | ||||
Swissprot | P48785 | 1e-136 | PRH_ARATH; Pathogenesis-related homeodomain protein | ||||
TrEMBL | A0A371FEV9 | 0.0 | A0A371FEV9_MUCPR; Pathogenesis-related homeodomain protein (Fragment) | ||||
STRING | GLYMA13G00540.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5275 | 33 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.2 | 4e-84 | pathogenesis related homeodomain protein A |
Publications ? help Back to Top | |||
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