PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v2046130.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family DBB
Protein Properties Length: 250aa    MW: 27096.3 Da    PI: 5.0764
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v2046130.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.79.9e-081555438
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     + C+ ++   + lfC+ ++ +lC +C +++H+       H+
  Lj4g3v2046130.1 15 KPCDSCKLASAALFCRPDSAFLCISCDSKIHSVnklasrHE 55
                     78******99*********************4355666665 PP
2zf-B_box29.51.5e-0957102342
         zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                       ++C+ +e+ +++  C+ +   lC +C + +H+       H++vp+
  Lj4g3v2046130.1  57 VWMCEVCEQAPASVTCKADAAALCVTCDSDIHSAnplarrHERVPV 102
                      689*****************************66899999*99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.4E-111259IPR000315B-box-type zinc finger
PROSITE profilePS5011910.0541259IPR000315B-box-type zinc finger
PfamPF006431.2E-61456IPR000315B-box-type zinc finger
CDDcd000211.20E-51659No hitNo description
PROSITE profilePS5011911.00755102IPR000315B-box-type zinc finger
PfamPF006431.6E-756102IPR000315B-box-type zinc finger
CDDcd000214.15E-858102No hitNo description
SMARTSM003361.7E-1060102IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGLEGLRSGW SVPPKPCDSC KLASAALFCR PDSAFLCISC DSKIHSVNKL ASRHERVWMC  60
EVCEQAPASV TCKADAAALC VTCDSDIHSA NPLARRHERV PVEPFFDSAE SIVKSSSAAA  120
AATAASFGFV VPTDEAFASH DDADAAAWLM PDPNFGSKLI DAPDVKSREM FFSELDPFLD  180
FDYTNSFQNN NNHNGGNDSV VPVQTKPLPP HPAPMMNHHT EGCFDIDFCR SKLSSSFNYP  240
SQSLSQSVSR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.4450.0cell culture| floral bud| pod| protoplast| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v2046130.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507813.11e-131zinc finger protein CONSTANS-LIKE 5 isoform X2
SwissprotQ9FHH83e-75COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A371G5961e-133A0A371G596_MUCPR; Zinc finger protein CONSTANS-LIKE 5 (Fragment)
STRINGXP_004507812.11e-130(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.13e-67CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]