PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1802450.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family G2-like
Protein Properties Length: 418aa    MW: 46562.1 Da    PI: 9.216
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1802450.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.22.9e-31250305156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W+p+LH rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
  Lj4g3v1802450.2 250 KARRCWSPDLHCRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 305
                      68****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.151247307IPR017930Myb domain
SuperFamilySSF466894.93E-16248308IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-27248308IPR009057Homeodomain-like
TIGRFAMsTIGR015578.0E-26250305IPR006447Myb domain, plants
PfamPF002497.5E-6252303IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MASPSELSLD FKPHSYSMLL KSFADQNDQT YKLEEFLSRL EEERLKIDAF KRELPLCMQL  60
LTNAMEASRQ QLESFRVNNQ DNRPVLEEFI PVKHLASDQS SDQKATNISD NKANWMTSAQ  120
LWSQASEAIT KQQSTIKESD GDMIGFNNTS PNKLVLDNKQ RNGGAFLPFS KERNSLQALP  180
ELALASAEKE IEDKKHADGE KGGSSCQKRE SNNTGNNDGV VIDQAKENSV ASHAQNTNNN  240
NNTQNQHHRK ARRCWSPDLH CRFVNALQML GGSQVATPKQ IRELMKVDGL TNDEVKSHLQ  300
KYRLHTRRPS PSPQSGAPAA QLVVLGGIWV PPEYATAAGH TRTPTLYGAH PAAPPPSTAH  360
PLPLTGHHHT TALRSSIPQR HHNHCFRRLH DTNTTIMCTG PLPTAIGHRN PQGTRRRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-13250303255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-13250303255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-13250303154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-13250303154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-13250303154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-13250303154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-13250303255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-13250303255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-13250303255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-13250303255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-13250303255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-13250303255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed 3 days after germination, with a gradual decrease before the floral transition and remains at low levels afterward. {ECO:0000269|PubMed:25132385}.
UniprotTISSUE SPECIFICITY: Specifically expressed in vascular tissues of cotyledons, rosette leaves and cauline leaves. Not detected in the vegetative shoot apical meristem. {ECO:0000269|PubMed:25132385}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1802450.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017422950.11e-173PREDICTED: myb family transcription factor EFM
SwissprotQ9ZQ851e-119EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A371EVE51e-173A0A371EVE5_MUCPR; Myb family transcription factor EFM (Fragment)
STRINGGLYMA05G08150.11e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54663455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-100G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]