PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1802450.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family G2-like
Protein Properties Length: 297aa    MW: 33380.1 Da    PI: 6.4078
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1802450.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.19.2e-24250297148
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkS 48 
                      k+r++W+p+LH rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkS
  Lj4g3v1802450.1 250 KARRCWSPDLHCRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKS 297
                      68*********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.24247297IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-18248297IPR009057Homeodomain-like
SuperFamilySSF466899.5E-9248297IPR009057Homeodomain-like
TIGRFAMsTIGR015572.1E-18250297IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010452Biological Processhistone H3-K36 methylation
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:1903507Biological Processnegative regulation of nucleic acid-templated transcription
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MASPSELSLD FKPHSYSMLL KSFADQNDQT YKLEEFLSRL EEERLKIDAF KRELPLCMQL  60
LTNAMEASRQ QLESFRVNNQ DNRPVLEEFI PVKHLASDQS SDQKATNISD NKANWMTSAQ  120
LWSQASEAIT KQQSTIKESD GDMIGFNNTS PNKLVLDNKQ RNGGAFLPFS KERNSLQALP  180
ELALASAEKE IEDKKHADGE KGGSSCQKRE SNNTGNNDGV VIDQAKENSV ASHAQNTNNN  240
NNTQNQHHRK ARRCWSPDLH CRFVNALQML GGSQVATPKQ IRELMKVDGL TNDEVKS
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed 3 days after germination, with a gradual decrease before the floral transition and remains at low levels afterward. {ECO:0000269|PubMed:25132385}.
UniprotTISSUE SPECIFICITY: Specifically expressed in vascular tissues of cotyledons, rosette leaves and cauline leaves. Not detected in the vegetative shoot apical meristem. {ECO:0000269|PubMed:25132385}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00261DAPTransfer from AT2G03500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1802450.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027368917.11e-138myb family transcription factor EFM
SwissprotQ9ZQ853e-90EFM_ARATH; Myb family transcription factor EFM
TrEMBLA0A371EVE51e-137A0A371EVE5_MUCPR; Myb family transcription factor EFM (Fragment)
STRINGGLYMA05G08150.11e-135(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-80G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]