PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1736080.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 27732.3 Da    PI: 9.2067
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1736080.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.85.2e-32959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk+nrqvtf+kRrngilKKA+ELSvLCdaeva+iifs++gklye+ss
  Lj4g3v1736080.1  9 KRIENKINRQVTFAKRRNGILKKAYELSVLCDAEVALIIFSNRGKLYEFSS 59
                     79***********************************************96 PP
2K-box86.84.3e-29811729100
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                       + ++  + +qe+ +Lk+++enLqr+qR+llGed+ +++  +L+qLe+qLe +l++iRs+K++++l+q+ +l +ke  l e+n+ Lr+klee
  Lj4g3v1736080.1  81 SSPTNDTQNYQEYVRLKARVENLQRSQRNLLGEDIAQMNTTQLEQLENQLEVALRNIRSTKTQFMLDQLADLHNKEAVLVETNHVLRNKLEE 172
                      44455666789******************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.8E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.922161IPR002100Transcription factor, MADS-box
CDDcd002651.22E-44278No hitNo description
SuperFamilySSF554557.59E-34285IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004048.7E-333859IPR002100Transcription factor, MADS-box
PfamPF014862.2E-2584170IPR002487Transcription factor, K-box
PROSITE profilePS5129714.14886176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRGKVELKR IENKINRQVT FAKRRNGILK KAYELSVLCD AEVALIIFSN RGKLYEFSST  60
SSIMKTLEKY QKYSYSALES SSPTNDTQNY QEYVRLKARV ENLQRSQRNL LGEDIAQMNT  120
TQLEQLENQL EVALRNIRST KTQFMLDQLA DLHNKEAVLV ETNHVLRNKL EESNNSHNPV  180
VRLALEAGVP NIHYTRFPPQ SEGFFQHMGV NPNLQIGYNP SHDDVNAGAS SLNMHGFASG  240
WML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A3e-24751701101Developmental protein SEPALLATA 3
4ox0_B3e-24751701101Developmental protein SEPALLATA 3
4ox0_C3e-24751701101Developmental protein SEPALLATA 3
4ox0_D3e-24751701101Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1736080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014506954.11e-151MADS-box protein EJ2-like
SwissprotQ8LLR21e-104MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A1S3ULX71e-149A0A1S3ULX7_VIGRR; MADS-box protein EJ2-like
STRINGXP_007155209.11e-148(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.11e-91MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]