PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj4g3v1635580.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Dof

Protein Properties

Length: 470aa MW: 50937.9 Da PI: 4.9512

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj4g3v1635580.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.6	3.1e-39	133	193	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k ++cprC+s++tkfCyynny+++qPryfCkaC+ryWt GG++rnvPvG+grrknk+ss Lj4g3v1635580.1 133 PDKVIPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTSGGTMRNVPVGAGRRKNKNSS 193 78999*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	123	190	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.9E-32	135	191	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.453	137	191	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	139	175	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence Send to blast
MQQVRDPAIR LFGQKISRTE DADDTGFSGA GCINIDKEEE QQQYRDGGGG IGQNPEEEKD 60 PIDNEDSGSE NGNEKEQEAD LPPANEEETK NSSTSPGAVV NPETPSIEEE TAKSKSEQSD 120 PAQSQEKTTL KKPDKVIPCP RCNSMDTKFC YYNNYNVNQP RYFCKACQRY WTSGGTMRNV 180 PVGAGRRKNK NSSSHFGHIS ISEALQAARI DAHDGTTHLP ALKTNGRVLS FGLDGPICDS 240 MTSVLNLGEN KVLNQTLPVP CKSGENGDDC SSATSSITVS SSVGESNKSS IQNNGFIPQL 300 PCIPSVPWPY YTWNTTSVPS PAMCPSGFLY PAAFWNCSMP GNWNVPWFPS NPSTSNPNSP 360 SSGPNSPTLG KHSRDVDDVS EKDSLQNEEP SKQRNGSVLT PKTLRIDDPN EAAKSSIWAT 420 LGIKNESLSG GSMFKAFKST KGDEKNHVDS SVLRANPAAL SRSLNFHENS

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence Send to blast

MQQVRDPAIR LFGQKISRTE DADDTGFSGA GCINIDKEEE QQQYRDGGGG IGQNPEEEKD  60
PIDNEDSGSE NGNEKEQEAD LPPANEEETK NSSTSPGAVV NPETPSIEEE TAKSKSEQSD  120
PAQSQEKTTL KKPDKVIPCP RCNSMDTKFC YYNNYNVNQP RYFCKACQRY WTSGGTMRNV  180
PVGAGRRKNK NSSSHFGHIS ISEALQAARI DAHDGTTHLP ALKTNGRVLS FGLDGPICDS  240
MTSVLNLGEN KVLNQTLPVP CKSGENGDDC SSATSSITVS SSVGESNKSS IQNNGFIPQL  300
PCIPSVPWPY YTWNTTSVPS PAMCPSGFLY PAAFWNCSMP GNWNVPWFPS NPSTSNPNSP  360
SSGPNSPTLG KHSRDVDDVS EKDSLQNEEP SKQRNGSVLT PKTLRIDDPN EAAKSSIWAT  420
LGIKNESLSG GSMFKAFKST KGDEKNHVDS SVLRANPAAL SRSLNFHENS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.3173	1e-166	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj4g3v1635580.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016192216.1	0.0	cyclic dof factor 3
Refseq	XP_025629348.1	0.0	cyclic dof factor 3
TrEMBL	A0A371EP01	0.0	A0A371EP01_MUCPR; Cyclic dof factor 3 (Fragment)
STRING	GLYMA17G10920.3	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	7e-99	cycling DOF factor 3