PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v1630970.1 | ||||||||
Common Name | MYB31 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 270aa MW: 30132.3 Da PI: 6.4184 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.4 | 2.1e-15 | 21 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l Lj4g3v1630970.1 21 RGNFTDQEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNFWNTHL 66 89********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.449 | 1 | 15 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.99E-21 | 2 | 78 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.5E-10 | 2 | 26 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.254 | 16 | 70 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-15 | 20 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 21 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.06E-10 | 23 | 66 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-20 | 27 | 70 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MRCSKSCRLR WTNYLRPGIK RGNFTDQEEK MIIHLQALLG NRWAAIASYL PQRTDNDIKN 60 FWNTHLKKNL NKDQSGSEEG HDHEGHSPSS SSSQQIKGQW ERRLQTDIHM AKQALSDALS 120 LNNVSPETKP SPSHASTTYA SSYENIARLM ENWVKTTPSS VETNSSSGYS ISNVVTTGSS 180 SSEGGQSTTT CAQDHAFDYL LTFKLCDGGS RSRSVEENNK KEGIFQDLKT GFETQVPLTL 240 LEKWLCDEGA AQCHEDLINM SLEESSTGLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-17 | 2 | 71 | 40 | 109 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v1630970.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN863533 | 0.0 | JN863533.1 Lotus japonicus R2R3MYB transcription factor (MYB31) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027332081.1 | 1e-124 | myb-related protein 306-like | ||||
Swissprot | P81392 | 9e-78 | MYB06_ANTMA; Myb-related protein 306 | ||||
TrEMBL | I3RSY3 | 0.0 | I3RSY3_LOTJA; R2R3MYB transcription factor (Fragment) | ||||
STRING | XP_007138187.1 | 1e-109 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1016 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47600.1 | 2e-65 | myb domain protein 94 |
Publications ? help Back to Top | |||
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