PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1630970.1
Common NameMYB31
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 270aa    MW: 30132.3 Da    PI: 6.4184
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1630970.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.1e-152166148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg++T +E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Lj4g3v1630970.1 21 RGNFTDQEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNFWNTHL 66
                     89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.449115IPR017877Myb-like domain
SuperFamilySSF466892.99E-21278IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-10226IPR009057Homeodomain-like
PROSITE profilePS5129423.2541670IPR017930Myb domain
SMARTSM007173.8E-152068IPR001005SANT/Myb domain
PfamPF002491.8E-142166IPR001005SANT/Myb domain
CDDcd001672.06E-102366No hitNo description
Gene3DG3DSA:1.10.10.601.6E-202770IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MRCSKSCRLR WTNYLRPGIK RGNFTDQEEK MIIHLQALLG NRWAAIASYL PQRTDNDIKN  60
FWNTHLKKNL NKDQSGSEEG HDHEGHSPSS SSSQQIKGQW ERRLQTDIHM AKQALSDALS  120
LNNVSPETKP SPSHASTTYA SSYENIARLM ENWVKTTPSS VETNSSSGYS ISNVVTTGSS  180
SSEGGQSTTT CAQDHAFDYL LTFKLCDGGS RSRSVEENNK KEGIFQDLKT GFETQVPLTL  240
LEKWLCDEGA AQCHEDLINM SLEESSTGLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1727140109B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1630970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8635330.0JN863533.1 Lotus japonicus R2R3MYB transcription factor (MYB31) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027332081.11e-124myb-related protein 306-like
SwissprotP813929e-78MYB06_ANTMA; Myb-related protein 306
TrEMBLI3RSY30.0I3RSY3_LOTJA; R2R3MYB transcription factor (Fragment)
STRINGXP_007138187.11e-109(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.12e-65myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Shelton D, et al.
    Transcription factors of Lotus: regulation of isoflavonoid biosynthesis requires coordinated changes in transcription factor activity.
    Plant Physiol., 2012. 159(2): p. 531-47
    [PMID:22529285]