PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1598230.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 220aa    MW: 24318.4 Da    PI: 7.5592
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1598230.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.4e-11101148455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Lj4g3v1598230.1 101 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 148
                      8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.54E-1195152No hitNo description
SuperFamilySSF474594.19E-1895167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1897168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.82897147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-8101148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10103153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MDPPLFNDST FSSANPSLSE IWPPDPDPTT SSTLLPPRRK RNLPPFSSSN DSCGNKHVKL  60
GDSVDELKGE PEKQPPSPPP PPPPKQDYIH VRARRGQATD SHSLAERARR EKISERMKIL  120
QDLVPGCNKV IGKALVLDEI INYIQSLQHQ VEFLSMKLEA VNSRFNMNPT IDCFSSKDVG  180
TQPFDLAGII FGSQASRGYA QGSQPGWLHM QITGGFEKTT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.260320.0floral bud
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1598230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1373970.0BT137397.1 Lotus japonicus clone JCVI-FLLj-17K3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027332721.11e-113transcription factor BHLH094-like
SwissprotQ69WS34e-70BH094_ORYSJ; Transcription factor BHLH094
TrEMBLI3SAA01e-161I3SAA0_LOTJA; Uncharacterized protein
STRINGGLYMA17G10290.11e-106(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-71BIG PETAL P