PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v1598230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 220aa MW: 24318.4 Da PI: 7.5592 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.7 | 6.4e-11 | 101 | 148 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq Lj4g3v1598230.1 101 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 148 8*************************9....677*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 4.54E-11 | 95 | 152 | No hit | No description |
SuperFamily | SSF47459 | 4.19E-18 | 95 | 167 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-18 | 97 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.828 | 97 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.7E-8 | 101 | 148 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.6E-10 | 103 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MDPPLFNDST FSSANPSLSE IWPPDPDPTT SSTLLPPRRK RNLPPFSSSN DSCGNKHVKL 60 GDSVDELKGE PEKQPPSPPP PPPPKQDYIH VRARRGQATD SHSLAERARR EKISERMKIL 120 QDLVPGCNKV IGKALVLDEI INYIQSLQHQ VEFLSMKLEA VNSRFNMNPT IDCFSSKDVG 180 TQPFDLAGII FGSQASRGYA QGSQPGWLHM QITGGFEKTT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.26032 | 0.0 | floral bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v1598230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT137397 | 0.0 | BT137397.1 Lotus japonicus clone JCVI-FLLj-17K3 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027332721.1 | 1e-113 | transcription factor BHLH094-like | ||||
Swissprot | Q69WS3 | 4e-70 | BH094_ORYSJ; Transcription factor BHLH094 | ||||
TrEMBL | I3SAA0 | 1e-161 | I3SAA0_LOTJA; Uncharacterized protein | ||||
STRING | GLYMA17G10290.1 | 1e-106 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1171 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59640.1 | 3e-71 | BIG PETAL P |