PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1335610.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 671aa    MW: 74920.9 Da    PI: 5.8341
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1335610.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS408.75.4e-1252876562374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      v+ L+ c++a+ss++ +++++++a+l elasp+g +++ R+ ayfteALa r++r ++++++  +  +    + +e+++al+l+++++P++kf 
  Lj4g3v1335610.1 287 VSFLTGCVDAISSRNVTAINHFIAKLGELASPRGrTSISRICAYFTEALAIRITRLWPHVFHVTTIPRVL--DDDETVTALRLLNQITPVPKFL 378
                      7889******************************99*************************977655554..5788999*************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      h+t N+++l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTgvg+    sk+el+etg+rLa fAe+l++pfef++ v++rled
  Lj4g3v1335610.1 379 HFTSNEMLLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRTHPPSHVRITGVGE----SKQELNETGDRLAGFAEALNLPFEFHP-VVDRLED 467
                      *******************************************************....***************************.7****** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpresee 281
                      ++l++L+vk++E++aVn+ lqlh++l +    +   +++L l++s++P++vv++eqea+hn++++ +r++++l+yysalfds+ + +l ++s  
  Lj4g3v1335610.1 468 VRLWMLHVKEHESVAVNCFLQLHKTLYDGSGGA--LRDFLGLIRSTNPTIVVMAEQEAEHNEARLETRVCNSLKYYSALFDSIdHIGLQEQSPV 559
                      *************************95543333..589*********************************************9999******* PP

             GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerl.eeaGFkpvplsekaakqaklllrkvksdgyrveee....sgslvlgWkdrpLvsv 370
                      rik+E++  +rei+n++aceg+er erhe+++kWr+ + e+ GF+ + ++e++  q + ll++++ + y+v ++     + l+lgW d+pL++v
  Lj4g3v1335610.1 560 RIKIEEM-YAREIRNIIACEGRERAERHESFAKWRKLMvEQGGFRCMGVTERELVQSRFLLKMYSCENYSVMKQeedgGEGLTLGWLDQPLYTV 652
                      *******.89**************************8835689**********************888999744334445677*********** PP

             GRAS 371 SaWr 374
                      SaW+
  Lj4g3v1335610.1 653 SAWT 656
                      ***6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.969260632IPR005202Transcription factor GRAS
PfamPF035141.9E-122287656IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MLAGCSSPAL SSPRHRLRSE ASAQFQACHF QLPSMSTQRL DLPRSAFPRK DTTTTSSRSQ  60
PLRPVGISVE KTNESKSSTC SLKQNIRLPP LATTTASLGG DIIKGEEFWE KKSTKSLKRV  120
AEHGDDDDDD ESFTSRYKRK KGNGNSDEVL EAGENFGSFW SVHSFGGLNL PSSLPFSLNC  180
SGDEERVCFA PAEVISAPLP FSNNNPWLES AVTTITNFGE GSHQHQQHVK EGSVSNDSSD  240
SQSLSLRLNE NVTSELEVGN GSGNPHHHEV ETGEEDEQEE HRGFELVSFL TGCVDAISSR  300
NVTAINHFIA KLGELASPRG RTSISRICAY FTEALAIRIT RLWPHVFHVT TIPRVLDDDE  360
TVTALRLLNQ ITPVPKFLHF TSNEMLLRAF EGKDRVHIID FDIKQGLQWP SLFQSLASRT  420
HPPSHVRITG VGESKQELNE TGDRLAGFAE ALNLPFEFHP VVDRLEDVRL WMLHVKEHES  480
VAVNCFLQLH KTLYDGSGGA LRDFLGLIRS TNPTIVVMAE QEAEHNEARL ETRVCNSLKY  540
YSALFDSIDH IGLQEQSPVR IKIEEMYARE IRNIIACEGR ERAERHESFA KWRKLMVEQG  600
GFRCMGVTER ELVQSRFLLK MYSCENYSVM KQEEDGGEGL TLGWLDQPLY TVSAWTPVDA  660
AGSSSSFSQP A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-702646571380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.68840.0pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1335610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004515801.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A2Z6PMZ20.0A0A2Z6PMZ2_TRISU; Uncharacterized protein
STRINGXP_004515801.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein