PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1335440.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family M-type_MADS
Protein Properties Length: 150aa    MW: 17154.8 Da    PI: 4.3841
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1335440.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.41.1e-192401149
                     HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     vtfskR+ gi+KKA ELS+LC++++a+i+fs+ g+ +++
  Lj4g3v1335440.1  2 VTFSKRKSGIFKKALELSILCGIQIAIILFSPGGNPFTF 40
                     9*********************************98888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002661.90E-23161No hitNo description
PfamPF003194.0E-19140IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.46144IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.72E-20267IPR002100Transcription factor, MADS-box
SMARTSM004328.9E-13243IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-10621IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-102142IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MVTFSKRKSG IFKKALELSI LCGIQIAIIL FSPGGNPFTF GSPSVEAVVN NFLYLRDEEQ  60
DIYEPSQNYV VYQINQQIEY LKDRIQMAAE KMEVVRNDLK NLDPLEGNNA NLEELQKMKT  120
LLIYLRDSVK MTIMELEAAE ALLELANQDM
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1335440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.17e-22AGAMOUS-like 29