PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1107600.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 302aa    MW: 31437.3 Da    PI: 7.3562
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1107600.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.8e-1099123126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt+lC+ f++ GtC+y  +C+FaH+
  Lj4g3v1107600.1  99 FKTKLCCKFRA-GTCPYVTNCNFAHS 123
                      69*********.*************8 PP
2zf-CCCH18.92.6e-06173198126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      yk + C+ f+    C+yGd+C+F H+
  Lj4g3v1107600.1 173 YKGRHCKKFYTEEGCPYGDSCTFLHD 198
                      78888********************7 PP
3zf-CCCH43.26.5e-14262287126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      +kt++C+ +  tG+C++G++C+FaHg
  Lj4g3v1107600.1 262 WKTRICNKWEMTGYCPFGNKCHFAHG 287
                      8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.6E-1496131IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-896129IPR000571Zinc finger, CCCH-type
SMARTSM003560.00398124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.13198125IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-799123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-10170200IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-8170200IPR000571Zinc finger, CCCH-type
SMARTSM003560.086172199IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.098172200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-16257288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-9258288IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-9261288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.309261289IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-11262287IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDYGRDGNVV QIITTGGGGG GGGGGGGGDS WPGDQADWAT EDEYRYWNGN EDTAPSNGDG  60
RQSQSRSGSE PPSKKARGSS ATSSSASQER SKAIGKMFFK TKLCCKFRAG TCPYVTNCNF  120
AHSIEELRRP PPNWQEIVAA HEEEKAVLMS EPREEFQIPT IGSYAGDVSQ RSYKGRHCKK  180
FYTEEGCPYG DSCTFLHDEQ SKNRESVAIS LGPGGYAGGG GGGGSGGGAG GGSGSGAVTP  240
TGAASAAASS AGNGANVKPS NWKTRICNKW EMTGYCPFGN KCHFAHGATG LISAFSLQFP  300
SF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.152130.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v1107600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096770.0AP009677.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT10E08, TM0570, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628788.11e-132zinc finger CCCH domain-containing protein 12
SwissprotQ9LQM33e-94C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A072TT841e-131A0A072TT84_MEDTR; Zinc finger CCCH domain protein
TrEMBLA0A2Z6NGJ71e-131A0A2Z6NGJ7_TRISU; Uncharacterized protein
STRINGAET032641e-131(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77513342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.16e-82C3H family protein