PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0756940.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 295aa    MW: 32524.6 Da    PI: 10.0806
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0756940.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.35.4e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G g W+tI            R+  ++k++w++
  Lj4g3v0756940.1  5 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEfssilRMRSNVDLKDKWRN 55
                     79***********************************9***********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.669161IPR017930Myb domain
SuperFamilySSF466897.41E-15267IPR009057Homeodomain-like
SMARTSM007172.9E-5459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-12556IPR009057Homeodomain-like
PfamPF002492.9E-7555IPR001005SANT/Myb domain
CDDcd116602.16E-17657No hitNo description
PROSITE profilePS5150421.862115187IPR005818Linker histone H1/H5, domain H15
SMARTSM005262.3E-8123182IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467857.07E-15124196IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.4E-13126190IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.8E-8127178IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILTDPEFSSI LRMRSNVDLK DKWRNINVTA  60
IWGSRQKAKL ALKKNLPPPK IDNSHLALST VVQREEVLDT KPLAISDGTL QSPNSKDHMS  120
RLGDNHILEA IVNMKEQKGC DKVAIASYLE EKYQCPPNLR KLLSTKMKHM VASGKIIKEK  180
LKYRIPPSSA VSEKRRCSSV ILLEDRPRDS RETEKSDEVH ILSKSQIDAE LSKGKRMTAQ  240
EAAAAAAKAV VEAELAVAQA EAAAREAEAA EAEAEAAQVF AKAAMKALKC KMLHF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.91481e-119floral bud| pod
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00626PBMTransfer from PK06103.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0756940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524694.11e-149telomere repeat-binding factor 2
TrEMBLK7KPH51e-148K7KPH5_SOYBN; Uncharacterized protein
STRINGGLYMA05G22500.31e-149(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.34e-64telomere repeat binding factor 1