PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v0756940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 295aa MW: 32524.6 Da PI: 10.0806 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.3 | 5.4e-11 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 +++WT+eE+ l+ +v ++G g W+tI R+ ++k++w++ Lj4g3v0756940.1 5 KQKWTAEEEAALKAGVVKHGAGKWRTILTDPEfssilRMRSNVDLKDKWRN 55 79***********************************9***********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.669 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.41E-15 | 2 | 67 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-5 | 4 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-12 | 5 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.9E-7 | 5 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.16E-17 | 6 | 57 | No hit | No description |
PROSITE profile | PS51504 | 21.862 | 115 | 187 | IPR005818 | Linker histone H1/H5, domain H15 |
SMART | SM00526 | 2.3E-8 | 123 | 182 | IPR005818 | Linker histone H1/H5, domain H15 |
SuperFamily | SSF46785 | 7.07E-15 | 124 | 196 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 6.4E-13 | 126 | 190 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00538 | 3.8E-8 | 127 | 178 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MGAPKQKWTA EEEAALKAGV VKHGAGKWRT ILTDPEFSSI LRMRSNVDLK DKWRNINVTA 60 IWGSRQKAKL ALKKNLPPPK IDNSHLALST VVQREEVLDT KPLAISDGTL QSPNSKDHMS 120 RLGDNHILEA IVNMKEQKGC DKVAIASYLE EKYQCPPNLR KLLSTKMKHM VASGKIIKEK 180 LKYRIPPSSA VSEKRRCSSV ILLEDRPRDS RETEKSDEVH ILSKSQIDAE LSKGKRMTAQ 240 EAAAAAAKAV VEAELAVAQA EAAAREAEAA EAEAEAAQVF AKAAMKALKC KMLHF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.9148 | 1e-119 | floral bud| pod |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00626 | PBM | Transfer from PK06103.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v0756940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003524694.1 | 1e-149 | telomere repeat-binding factor 2 | ||||
TrEMBL | K7KPH5 | 1e-148 | K7KPH5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA05G22500.3 | 1e-149 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1453 | 33 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 4e-64 | telomere repeat binding factor 1 |