PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0654660.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 383aa    MW: 43398.9 Da    PI: 5.4717
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0654660.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11215257754
                      HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      + E+ RR+++N ++  Lr+l+P++     +K++ a+++  A++YIk+L
  Lj4g3v0654660.1 215 ATEKDRREQLNGKYKILRSLIPSP-----TKPDRASVVGDAIDYIKEL 257
                      78**********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.049208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-13213276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.9E-10214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9214257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-10215275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.53E-9217257No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MVPENTTNNN NNIMDNHLVK EVIDASPYQQ STWDPNVQEL QDMSYANHQE QQFQHIDAQN  60
YCQSYNPSSI LDPSYPSPDL LNFLHLPTCS ASSLLTNPPN ICISNPTQRT PNFQNSMTFL  120
GELPMGPDNT SASSVLYDPL FHLNLPPQPP ALRELFQSLP RGYRLPTSSR DDSLFGGGDE  180
MEGDGSQLDM GVLEFNRGTT SVGKGREGKG AKPFATEKDR REQLNGKYKI LRSLIPSPTK  240
PDRASVVGDA IDYIKELIRT VNELKLLVEK KRHERERCKR PKNEEDAEES CNIKPFGDPD  300
GYIRTSWLQR KSKESEVDVR IIDDDVTIKF FQRKKINCLL FVSKVLDELQ LELHHLAGGH  360
VGEYWSFLFN SKVGVSLDMI LIK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0654660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0090660.0AP009066.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT07D18, TM0256, complete sequence.
GenBankBT1363910.0BT136391.1 Lotus japonicus clone JCVI-FLLj-19K6 unknown mRNA.
GenBankFJ3797600.0FJ379760.1 Lotus japonicus putative basic helix-loop-helix protein BHLH14 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014631531.10.0transcription factor bHLH89
TrEMBLC0JP250.0C0JP25_LOTJA; Putative basic helix-loop-helix protein BHLH14
STRINGGLYMA05G26490.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.12e-59bHLH family protein