PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0620100.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 289aa    MW: 32423.8 Da    PI: 8.185
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0620100.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.59e-1283126855
                      HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +Er RR+++++ f++L  llP +   p  K +K++i  ++v YIk Lq
  Lj4g3v0620100.1  83 IERERRKKMRNMFDTLHALLPRL---P-SKADKSTIIDETVSYIKTLQ 126
                      7*********************6...3.8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.05975125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1580150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-1081131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.7E-1582139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-1183130No hitNo description
PfamPF000102.1E-983126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MALEGHDLNL GFVWESQSLG SLPNFDNASE SREKLDIKPQ NKKEEGNGEE ALVNKKRSRG  60
NRREKNVVAD GEGKVDHEVQ IWIERERRKK MRNMFDTLHA LLPRLPSKAD KSTIIDETVS  120
YIKTLQETLE KLEKQKQERL QSSMLNSQWQ QPCDSREGLI PDMGSSISLS SGMVGMKTSS  180
NPSISSNSAS VQPVGFQTWS YQNIVLNVIG FEAQFSISTA KKKSTLTTIV FVLEKYKIEV  240
ISANIVCNGN SNVYLIIAQA KQDSYLFQDV NSVAEIYKKA AGEIQLFIA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0620100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027348315.11e-84transcription factor bHLH95
TrEMBLG7JK215e-83G7JK21_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES901318e-84(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47733358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.17e-22bHLH family protein