PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v0620100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 289aa MW: 32423.8 Da PI: 8.185 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.5 | 9e-12 | 83 | 126 | 8 | 55 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +Er RR+++++ f++L llP + p K +K++i ++v YIk Lq Lj4g3v0620100.1 83 IERERRKKMRNMFDTLHALLPRL---P-SKADKSTIIDETVSYIKTLQ 126 7*********************6...3.8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.059 | 75 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-15 | 80 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.4E-10 | 81 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.7E-15 | 82 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.60E-11 | 83 | 130 | No hit | No description |
Pfam | PF00010 | 2.1E-9 | 83 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MALEGHDLNL GFVWESQSLG SLPNFDNASE SREKLDIKPQ NKKEEGNGEE ALVNKKRSRG 60 NRREKNVVAD GEGKVDHEVQ IWIERERRKK MRNMFDTLHA LLPRLPSKAD KSTIIDETVS 120 YIKTLQETLE KLEKQKQERL QSSMLNSQWQ QPCDSREGLI PDMGSSISLS SGMVGMKTSS 180 NPSISSNSAS VQPVGFQTWS YQNIVLNVIG FEAQFSISTA KKKSTLTTIV FVLEKYKIEV 240 ISANIVCNGN SNVYLIIAQA KQDSYLFQDV NSVAEIYKKA AGEIQLFIA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v0620100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027348315.1 | 1e-84 | transcription factor bHLH95 | ||||
TrEMBL | G7JK21 | 5e-83 | G7JK21_MEDTR; Helix loop helix DNA-binding domain protein | ||||
STRING | AES90131 | 8e-84 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4773 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49770.1 | 7e-22 | bHLH family protein |