PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0571920.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family G2-like
Protein Properties Length: 325aa    MW: 36669.7 Da    PI: 9.4418
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0571920.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.41.4e-32262317156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k+r++W+peLH+rFv+a+++LGGs+ AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  Lj4g3v0571920.1 262 KQRRCWSPELHRRFVNALQKLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLH 317
                      79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.693259319IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.1E-29260318IPR009057Homeodomain-like
SuperFamilySSF466893.76E-17260319IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-27262317IPR006447Myb domain, plants
PfamPF002492.9E-8264315IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MGSVPAELSL DLRPSFVPKT VANFLYELST IPRSTDKLSR LHDFLARLED ELRKIDAFKR  60
ELPLCMLLLN DAILVLKEES EKCRAHNSPP VLEEFIPLKK EHDQSEENDS KENECRDKKN  120
WMSSVQLWNN TTPRKACDQI PIQHLNYKLD TKKNEEGNSV VAEDPFQSCN VKNGGSAFLP  180
FSTYSSIPVT TVALQAAKEE KEDTVLNRLS LLTPGVKSLR EGFGSRGSRS SSSSRAVSSS  240
SPPIVPPSLR AGSLQQQQNA RKQRRCWSPE LHRRFVNALQ KLGGSQAATP KQIRELMQVD  300
GLTNDEVKSH LQKYRLHRQP LISRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-14262318258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-14262318258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-14262318157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-14262318157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-14262318157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-14262318157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-14262318258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-14262318258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-14262318258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-14262318258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-14262318258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-14262318258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.225410.0pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0571920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1443991e-111BT144399.1 Lotus japonicus clone JCVI-FLLj-20H9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505182.21e-147myb family transcription factor EFM isoform X1
TrEMBLA0A1S2YI811e-145A0A1S2YI81_CICAR; myb family transcription factor EFM isoform X1
STRINGXP_007156531.11e-125(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.18e-58G2-like family protein