PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v0513460.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 167aa MW: 18277.9 Da PI: 8.3193 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.5 | 0.00014 | 56 | 95 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R +++ +++ L++l+ + +K + +++L +A+eYI L Lj4g3v0513460.2 56 KDRKEKVGERIVALQQLVSPY-----GKTDTSSVLNEAMEYIGFL 95 6788889999999*****999.....9***************887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.12E-4 | 44 | 100 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-8 | 45 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.242 | 46 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.45E-11 | 47 | 110 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MIASSFCNAD SVFSREEGID VRKMIGHKRS PCSVDQSSYT SIASKKQKAD LSMSSKDRKE 60 KVGERIVALQ QLVSPYGKTD TSSVLNEAME YIGFLHKQVK LLSAPYLESS PATMMEGIEP 120 CSLRNRGLCL VPVSITMGVA ESNGADIWAP IKTTSPKSEK DIVSQFH |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.2861 | 0.0 | cell culture| floral bud| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v0513460.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT140253 | 0.0 | BT140253.1 Lotus japonicus clone JCVI-FLLj-17O23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027346024.1 | 1e-107 | transcription factor bHLH153 isoform X1 | ||||
Swissprot | Q7XJU2 | 7e-56 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | I3SIF6 | 1e-120 | I3SIF6_LOTJA; Uncharacterized protein | ||||
STRING | GLYMA02G15520.1 | 1e-105 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10813 | 31 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 3e-58 | bHLH family protein |
Publications ? help Back to Top | |||
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