PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0506920.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 274aa    MW: 29963.8 Da    PI: 7.3401
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0506920.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87.2e-1280126354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+e+ErrRR+riN  +++Lr l+P+      +K++Ka+ L +++  +k+L
  Lj4g3v0506920.1  80 KSHSEAERRRRERINGHLATLRGLVPST-----EKMDKATLLGEVISQVKEL 126
                      58*************************8.....7*********999988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.56777126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-980126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-1381129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-1381130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-1283132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MVYTSFCDNN SSSGFNPNLH DVGASNSNGV SRGRLLSSSR SMVFESEKCE LVKPPAAATA  60
NKVGTGKNEH SEAKALAALK SHSEAERRRR ERINGHLATL RGLVPSTEKM DKATLLGEVI  120
SQVKELKKKA VEASKGLLIP TDSDEVKVEL CDNGEENESI SYMATVCSDY QSEILSDLKQ  180
TLDALQLQLV KAELSTLGER MKNVFVFTCC KRENVNIEAC QALASNVHQA LGSVLEKASN  240
ALEFSFRASD RCKRRRLSFI ESSSSSCNHE FCSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-1381151879Transcription factor MYC2
5gnj_B3e-1381151879Transcription factor MYC2
5gnj_E3e-1381151879Transcription factor MYC2
5gnj_F3e-1381151879Transcription factor MYC2
5gnj_G3e-1381151879Transcription factor MYC2
5gnj_I3e-1381151879Transcription factor MYC2
5gnj_M3e-1381151879Transcription factor MYC2
5gnj_N3e-1381151879Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18590ERRRRE
2252256KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0506920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020202302.11e-113transcription factor bHLH30
TrEMBLA0A371EEA41e-113A0A371EEA4_MUCPR; Transcription factor bHLH30
STRINGXP_004505138.11e-110(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-33bHLH family protein