PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj4g3v0462790.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Dof

Protein Properties

Length: 350aa MW: 37692.4 Da PI: 8.3212

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj4g3v0462790.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126	1.2e-39	49	108	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++al+cprCdstntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk++ Lj4g3v0462790.1 49 QQQALNCPRCDSTNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRV 108 57899****************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.1E-33	51	107	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.488	53	107	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	55	91	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-25	55	107	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MLGNCDKTAS NKWTQNMNDH HHHQVSTTMG STSSIRAMEK PGQELLQLQQ QALNCPRCDS 60 TNTKFCYYNN YSLSQPRHFC KACKRYWTRG GTLRNVPVGG GCRKNKRVIK RPTGSSTIDS 120 SPSPISSNSN PPSSNPQTTT TSQINPLFFG LPGGGSDVMN LQFPRFNSRV LSGDGGLGSG 180 SGSGFDLLQP QMNNTLGFIS GEVNDNCYRN NNGFSSNNNN SNNTLVSSYS SMFGNSSPSN 240 PVMASLLSST LRQQKFNAFQ GMVPFEQIES DEGGVVAASK EVKVEGQKWN NNNDNGSGGD 300 GGGLCQNQID QHVGLSDPSL YWNNNNNTAM GLGGWSDQVS NIGPSVTSLI

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MLGNCDKTAS NKWTQNMNDH HHHQVSTTMG STSSIRAMEK PGQELLQLQQ QALNCPRCDS  60
TNTKFCYYNN YSLSQPRHFC KACKRYWTRG GTLRNVPVGG GCRKNKRVIK RPTGSSTIDS  120
SPSPISSNSN PPSSNPQTTT TSQINPLFFG LPGGGSDVMN LQFPRFNSRV LSGDGGLGSG  180
SGSGFDLLQP QMNNTLGFIS GEVNDNCYRN NNGFSSNNNN SNNTLVSSYS SMFGNSSPSN  240
PVMASLLSST LRQQKFNAFQ GMVPFEQIES DEGGVVAASK EVKVEGQKWN NNNDNGSGGD  300
GGGLCQNQID QHVGLSDPSL YWNNNNNTAM GLGGWSDQVS NIGPSVTSLI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj4g3v0462790.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027346399.1	5e-94	dof zinc finger protein DOF1.4-like
TrEMBL	A0A4D6L7B8	1e-92	A0A4D6L7B8_VIGUN; Uncharacterized protein
STRING	XP_004505077.1	1e-87	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.2	4e-32	Dof family protein