PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0451060.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 392aa    MW: 43751.9 Da    PI: 5.1488
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0451060.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.57.8e-11201242854
                      HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       E+ RR+++N ++  Lr+l+P++     +K + a+++  A++YI++L
  Lj4g3v0451060.1 201 TEKERREQLNGKYKILRSLIPSP-----TKIDRASVVGDAIDYIREL 242
                      59*********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.605193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-9199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-9201244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-8201242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-12201259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.21E-10202242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MDNSYNNNNN NMDTNLVQDV IDDLPYQQSM WDPNVQEFQN MNYANHLEHQ PHEQQFHQIE  60
AQSYNPSSIM DPPYPAIDLH LPTCSASSLL TTPPNFHNSM GFLGDLPIGS DNTSAASSVL  120
CDPLFHLNQV PPPPTAFREL FQSLPRGYSF PMSSQNGSIF GGEGDEIDGD GGSQLDMGVL  180
EFNTINRVTA SVGKGREGKG TEKERREQLN GKYKILRSLI PSPTKIDRAS VVGDAIDYIR  240
ELIRTLNELK ILVEKKRCGR ERCKRARTED DGAESCNIKP FGDPDGHIRT SWLQRKSKDS  300
EVDVRIIDDD VTIKLSQRKK INCLLFASKV LDELQLEIHH VAGGHVGEYC SFLLNSKTIE  360
GSSVYASAIA NRMIDVLDTQ YYAAAVPHSS SY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.70170.0pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0451060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358831e-118AC235883.2 Glycine max clone GM_WBc0013D02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027347258.10.0transcription factor bHLH91-like
TrEMBLA0A0L9T4K70.0A0A0L9T4K7_PHAAN; Uncharacterized protein
STRINGXP_007163873.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.12e-50bHLH family protein