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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Lj4g3v0450340.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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| Family |
NAC |
| Protein Properties |
Length: 318aa MW: 35644.7 Da PI: 8.0908 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj4g3v0450340.1 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 125.1 | 5.9e-39 | 6 | 103 | 32 | 128 |
NAM 32 evikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmh 124
+i+evd+yk++Pw+Lp+k+ +++ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++ls+ ++++vg+kk Lvfy g+ pkg+kt+W+mh
Lj4g3v0450340.1 6 AIIAEVDLYKFDPWELPSKAVFGQQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILSSdGHQKVGVKKALVFYGGKPPKGVKTNWIMH 99
579**************7777899**************************************9967788************************* PP
NAM 125 eyrl 128
eyrl
Lj4g3v0450340.1 100 EYRL 103
**98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MPLPVAIIAE VDLYKFDPWE LPSKAVFGQQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT 60
GTDKPILSSD GHQKVGVKKA LVFYGGKPPK GVKTNWIMHE YRLVDKSFGP SFRTTTTHPP 120
VPAHPSNCNK KNSLRLDDWV LCRIYKKSNG TTTMPRPPLM ENDKELNSLE TMVPTMSTLS 180
MLNTNQNTTP PSSRTYEPEG LVENHDNFFH GYLTPDQSMQ NGNNNDTNDD NSFCVKRAIA 240
PSQFLNESGS AGSSFSTKRF HGDLNSGSSN TEENNNNSFV SLLSQLPQSA SFHANAILES 300
VEDGVMRQQF QLPNINWN
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 6e-59 | 5 | 149 | 46 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 6e-59 | 5 | 149 | 46 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 6e-59 | 5 | 149 | 46 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 6e-59 | 5 | 149 | 46 | 167 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 7e-59 | 5 | 149 | 49 | 170 | NAC domain-containing protein 19 |
| 3swm_B | 7e-59 | 5 | 149 | 49 | 170 | NAC domain-containing protein 19 |
| 3swm_C | 7e-59 | 5 | 149 | 49 | 170 | NAC domain-containing protein 19 |
| 3swm_D | 7e-59 | 5 | 149 | 49 | 170 | NAC domain-containing protein 19 |
| 3swp_A | 7e-59 | 5 | 149 | 49 | 170 | NAC domain-containing protein 19 |
| 3swp_B | 7e-59 | 5 | 149 | 49 | 170 | NAC domain-containing protein 19 |
| 3swp_C | 7e-59 | 5 | 149 | 49 | 170 | NAC domain-containing protein 19 |
| 3swp_D | 7e-59 | 5 | 149 | 49 | 170 | NAC domain-containing protein 19 |
| 4dul_A | 6e-59 | 5 | 149 | 46 | 167 | NAC domain-containing protein 19 |
| 4dul_B | 6e-59 | 5 | 149 | 46 | 167 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}. |
| Uniprot | TISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015034 | 2e-75 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
