PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v0423240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 207aa MW: 23752.4 Da PI: 5.4827 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.7 | 0.00047 | 46 | 85 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 + e+Er+RR+++ +++ Lr+l+ Ka+i A+ YIk+Lq Lj4g3v0423240.1 46 NLEAERKRREKLSTRLLMLRSLMN-----------KATIIDDAITYIKKLQ 85 5689****************9975...........559***********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-11 | 39 | 104 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.9E-8 | 41 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.06E-8 | 43 | 88 | No hit | No description |
SMART | SM00353 | 4.7E-6 | 47 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MGHVYDDRLS MSLDDLCFNA ESGNNRGRMG RRRYDNDENQ TFKSKNLEAE RKRREKLSTR 60 LLMLRSLMNK ATIIDDAITY IKKLQEEVVS LTQELQEVEV TLEISKPKVD ELVDAAEEMK 120 KWGIQEEVQV TQMNGNKLWV KMIIENKRGT FRKLAESLDT CSIAMMDTNL TAIKGALVIT 180 TCIQGMDGEA LEVHQIKQLL LEIVRAI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 49 | 54 | ERKRRE |
2 | 50 | 55 | RKRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v0423240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010558 | 1e-108 | AP010558.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT03A02, TM1616, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027348379.1 | 1e-86 | transcription factor DYT1-like | ||||
TrEMBL | A0A4P1QS55 | 1e-81 | A0A4P1QS55_LUPAN; Uncharacterized protein | ||||
STRING | XP_007148286.1 | 4e-69 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5510 | 29 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21330.1 | 7e-30 | bHLH family protein |