PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0189910.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 283aa    MW: 31532.1 Da    PI: 4.6319
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0189910.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.39.9e-07249272730
                      HHHHHHHHHHHHHHHHHHCTSCCC CS
              HLH   7 erErrRRdriNsafeeLrellPka 30 
                      + E+ RR+++N ++  Lr+l+P++
  Lj4g3v0189910.1 249 ATEKDRREQLNGKYKILRSLIPNP 272
                      78********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.007242283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-5243280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-4249272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-4251283No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MHEQTGCFDP NTMAEGVSSQ KDSFPQTLLD PQPQSLMVTE NTTNSNNIMD NHLVQEVIDA  60
PLYQQSTWDP NVQEVQDMSY ANHPEQQFQH IDAQNYCQSY TPSILDPSYP SPDLLNFLHL  120
PTCSASSLLT NPPNICISNP TQRTPNFQNS MTFLGDLPMG PDNTSASSVL YDPLFHLNLP  180
PQPPALRELF QSLPRGYRLP TSSRDDSLFG GGDEMEGDGS QLDMGVLDFN RDTASVGKGR  240
EGKGAKPFAT EKDRREQLNG KYKILRSLIP NPTKVHRIYA LSK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0189910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0090660.0AP009066.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT07D18, TM0256, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027347258.11e-129transcription factor bHLH91-like
TrEMBLC0JP250.0C0JP25_LOTJA; Putative basic helix-loop-helix protein BHLH14
STRINGXP_004504639.11e-122(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37433262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.14e-25bHLH family protein