PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v0189910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 283aa MW: 31532.1 Da PI: 4.6319 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.3 | 9.9e-07 | 249 | 272 | 7 | 30 |
HHHHHHHHHHHHHHHHHHCTSCCC CS HLH 7 erErrRRdriNsafeeLrellPka 30 + E+ RR+++N ++ Lr+l+P++ Lj4g3v0189910.1 249 ATEKDRREQLNGKYKILRSLIPNP 272 78********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 9.007 | 242 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.26E-5 | 243 | 280 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.4E-4 | 249 | 272 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.39E-4 | 251 | 283 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MHEQTGCFDP NTMAEGVSSQ KDSFPQTLLD PQPQSLMVTE NTTNSNNIMD NHLVQEVIDA 60 PLYQQSTWDP NVQEVQDMSY ANHPEQQFQH IDAQNYCQSY TPSILDPSYP SPDLLNFLHL 120 PTCSASSLLT NPPNICISNP TQRTPNFQNS MTFLGDLPMG PDNTSASSVL YDPLFHLNLP 180 PQPPALRELF QSLPRGYRLP TSSRDDSLFG GGDEMEGDGS QLDMGVLDFN RDTASVGKGR 240 EGKGAKPFAT EKDRREQLNG KYKILRSLIP NPTKVHRIYA LSK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v0189910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009066 | 0.0 | AP009066.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT07D18, TM0256, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027347258.1 | 1e-129 | transcription factor bHLH91-like | ||||
TrEMBL | C0JP25 | 0.0 | C0JP25_LOTJA; Putative basic helix-loop-helix protein BHLH14 | ||||
STRING | XP_004504639.1 | 1e-122 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3743 | 32 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31210.1 | 4e-25 | bHLH family protein |