PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj4g3v0147800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 336aa MW: 37751.2 Da PI: 7.8761 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.5 | 6.3e-10 | 163 | 210 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ +L++l+P + +k Ka +L + ++Y++sLq Lj4g3v0147800.1 163 SHSLAERVRREKISERMKRLQRLVPGC----DKVTGKALMLDEIINYVQSLQ 210 8*************************9....555*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.79E-17 | 157 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.85E-10 | 157 | 214 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 9.3E-17 | 159 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.948 | 159 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-7 | 163 | 210 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 9.8E-11 | 165 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MAAFSYQCHP FLVDPSFLLN INTGSPPLPT QFPLHQEASL NVTNQDTSCA DQSSKITISD 60 NEPSITKNLS PQSSMVVDKL EIGEQVTQKV TPKRRSRKDS SLNEPQSKDD ATEGRSKKQK 120 KSNGGVKDQD KARTEKKEQR KCPEEPPTGY IHVRARRGQA TDSHSLAERV RREKISERMK 180 RLQRLVPGCD KVTGKALMLD EIINYVQSLQ NQVEFLSMKL ASVNPMFYDM ATDLDTLLVR 240 PEKLNSLASP SPLSSVSHSH CNSPNQATTT FAETTNSIFH TANDFLLDNS SPFFLQGQRS 300 NLPSEETGCQ FWDTEDQRQK FLLHPYGFSN NLSSFH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj4g3v0147800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007137888.1 | 0.0 | hypothetical protein PHAVU_009G164300g | ||||
TrEMBL | V7AW58 | 0.0 | V7AW58_PHAVU; Uncharacterized protein | ||||
STRING | XP_007137888.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4182 | 33 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50915.2 | 3e-58 | bHLH family protein |