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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Lj4g3v0119780.2 |
| Organism |
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| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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| Family |
GRAS |
| Protein Properties |
Length: 419aa MW: 46508.4 Da PI: 5.1841 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Lj4g3v0119780.2 | genome | Kazusa | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 354.1 | 2.1e-108 | 108 | 418 | 1 | 312 |
GRAS 1 lvelLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93
l+++L+ cA+avs++d a+ + + l +++s +gdp qRl ay++e+L+arl s+s +ykal++++ + +e +++++++++++P+ kf
Lj4g3v0119780.2 108 LKQVLILCAQAVSDEDIPTARGWIDNiLGKMVSVAGDPSQRLGAYLLEGLRARLELSGSLIYKALKCEQPT---GKELMSYMHILYQICPYWKF 198
5799*****************9997626788***************************************9...99****************** PP
GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
+++ aN aI ea+++e+r+HiiDf+i qG+QW L+qaLa Rp+gpp +RiTgv++++s+ + le +gerL++fA++ gvpfef+ +a +
Lj4g3v0119780.2 199 AYISANAAIAEAMANESRIHIIDFQIAQGTQWHLLIQALAHRPGGPPFIRITGVDDSQSFhaRGGGLEIVGERLSDFARSYGVPFEFHS-AAMS 291
********************************************************9999889999***********************.8999 PP
GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
++e e+L v+pgEalaVn+ + lh+++desvs+e++rd++L+lvkslsPkvv+++eqe+++n+++F++rf+e+leyy+a+f+s+++ pr++
Lj4g3v0119780.2 292 GCEVERENLGVRPGEALAVNFPYVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLAEQESNTNTSPFFNRFMETLEYYTAMFESIDVACPRDD 385
9********************************************************************************************* PP
GRAS 280 eerikvErellgreivnvvacegaerrerhetl 312
++ri+ E+++++r+ivn+vacegaer+erhe +
Lj4g3v0119780.2 386 KKRISAEQHCVARDIVNMVACEGAERVERHELF 418
******************************976 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 419 aa
Download sequence Send
to blast |
MNCDSPSYGS VSSNRSPLSP QDSQSSHSDH HRSPENTYGS PISSLSSVDD GNELKHKLRE 60
LEISLLGLDE SDIVDSCDNW GSSLRGAPPP SAKYDWNLIA ENIPKLDLKQ VLILCAQAVS 120
DEDIPTARGW IDNILGKMVS VAGDPSQRLG AYLLEGLRAR LELSGSLIYK ALKCEQPTGK 180
ELMSYMHILY QICPYWKFAY ISANAAIAEA MANESRIHII DFQIAQGTQW HLLIQALAHR 240
PGGPPFIRIT GVDDSQSFHA RGGGLEIVGE RLSDFARSYG VPFEFHSAAM SGCEVERENL 300
GVRPGEALAV NFPYVLHHMP DESVSTENHR DRLLRLVKSL SPKVVTLAEQ ESNTNTSPFF 360
NRFMETLEYY TAMFESIDVA CPRDDKKRIS AEQHCVARDI VNMVACEGAE RVERHELFG
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP010408 | 0.0 | AP010408.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT31P09, TM1330, complete sequence. |
