PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v0119780.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family GRAS
Protein Properties Length: 419aa    MW: 46508.4 Da    PI: 5.1841
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v0119780.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS354.12.1e-1081084181312
             GRAS   1 lvelLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                      l+++L+ cA+avs++d   a+  + + l +++s +gdp qRl ay++e+L+arl  s+s +ykal++++ +    +e +++++++++++P+ kf
  Lj4g3v0119780.2 108 LKQVLILCAQAVSDEDIPTARGWIDNiLGKMVSVAGDPSQRLGAYLLEGLRARLELSGSLIYKALKCEQPT---GKELMSYMHILYQICPYWKF 198
                      5799*****************9997626788***************************************9...99****************** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                      +++ aN aI ea+++e+r+HiiDf+i qG+QW  L+qaLa Rp+gpp +RiTgv++++s+  +   le +gerL++fA++ gvpfef+  +a +
  Lj4g3v0119780.2 199 AYISANAAIAEAMANESRIHIIDFQIAQGTQWHLLIQALAHRPGGPPFIRITGVDDSQSFhaRGGGLEIVGERLSDFARSYGVPFEFHS-AAMS 291
                      ********************************************************9999889999***********************.8999 PP

             GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                        ++e e+L v+pgEalaVn+ + lh+++desvs+e++rd++L+lvkslsPkvv+++eqe+++n+++F++rf+e+leyy+a+f+s+++  pr++
  Lj4g3v0119780.2 292 GCEVERENLGVRPGEALAVNFPYVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLAEQESNTNTSPFFNRFMETLEYYTAMFESIDVACPRDD 385
                      9********************************************************************************************* PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetl 312
                      ++ri+ E+++++r+ivn+vacegaer+erhe +
  Lj4g3v0119780.2 386 KKRISAEQHCVARDIVNMVACEGAERVERHELF 418
                      ******************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.54182419IPR005202Transcription factor GRAS
PfamPF035147.2E-106108418IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MNCDSPSYGS VSSNRSPLSP QDSQSSHSDH HRSPENTYGS PISSLSSVDD GNELKHKLRE  60
LEISLLGLDE SDIVDSCDNW GSSLRGAPPP SAKYDWNLIA ENIPKLDLKQ VLILCAQAVS  120
DEDIPTARGW IDNILGKMVS VAGDPSQRLG AYLLEGLRAR LELSGSLIYK ALKCEQPTGK  180
ELMSYMHILY QICPYWKFAY ISANAAIAEA MANESRIHII DFQIAQGTQW HLLIQALAHR  240
PGGPPFIRIT GVDDSQSFHA RGGGLEIVGE RLSDFARSYG VPFEFHSAAM SGCEVERENL  300
GVRPGEALAV NFPYVLHHMP DESVSTENHR DRLLRLVKSL SPKVVTLAEQ ESNTNTSPFF  360
NRFMETLEYY TAMFESIDVA CPRDDKKRIS AEQHCVARDI VNMVACEGAE RVERHELFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-5314241436307GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.60820.0floral bud| flower| pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During development, higher expression levels are detected in young rosette leaves, senescing leaves and petals and sepals at flower stage 15. {ECO:0000269|PubMed:16680434}.
UniprotTISSUE SPECIFICITY: Expressed in roots, hypocotyls, cotyledons, shoot apex, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:16680434, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v0119780.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0104080.0AP010408.1 Lotus japonicus genomic DNA, chromosome 4, clone: LjT31P09, TM1330, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507608.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A2Z6LLQ30.0A0A2Z6LLQ3_TRISU; Uncharacterized protein
STRINGXP_004507608.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.11e-175SCARECROW-like 13