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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v3752130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | NAC | ||||||||
Protein Properties | Length: 372aa MW: 42688.7 Da PI: 7.4014 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.5 | 1.3e-53 | 16 | 145 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +ppGfrFhPtdeel+++yLkkkv+ +k+++ +vi+evd++k+ePwdL++++k ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk Lj3g3v3752130.1 16 VPPGFRFHPTDEELLHYYLKKKVSFQKFDM-DVIREVDLNKMEPWDLQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKC 108 69****************************.99**************964444222455*********************************** PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + + + ++g++ktLvfykgrap+g+ktdW+mheyrle Lj3g3v3752130.1 109 IRN-SYMKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 145 **9.8999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.24E-60 | 7 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.946 | 16 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.5E-28 | 17 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MVALTTMKMA SSNGGVPPGF RFHPTDEELL HYYLKKKVSF QKFDMDVIRE VDLNKMEPWD 60 LQERCKIGST PQNEWYFFSH KDRKYPTGSR TNRATNAGFW KATGRDKCIR NSYMKIGMRK 120 TLVFYKGRAP HGQKTDWIMH EYRLEDANDP EGNTNEDGWV VCRVFKKKNL FKIGNNEGSS 180 AHNSEQPINN SSGANARSFM HRDNQYLLLQ QQNTRNPSGF ELDKPELGLH HYPHLQNQPQ 240 YALFQSQQPL LQSHKPMVYN DYSYASSLPS DPPLKQLMTN PRDCESGSDG LRYQVSESGM 300 EVGSCEPPQE MGGGRGEGMN EWGVLDRLVT SHLGNEDSTK EVRFDDANPQ SVHQINQLSL 360 RGEMDFWGYA KQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-53 | 16 | 169 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-53 | 16 | 169 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-53 | 16 | 169 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-53 | 16 | 169 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-53 | 16 | 169 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-53 | 16 | 169 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-53 | 16 | 169 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-53 | 16 | 169 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-53 | 16 | 169 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-53 | 16 | 169 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-53 | 16 | 169 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-53 | 16 | 169 | 20 | 170 | NAC domain-containing protein 19 |
4dul_A | 4e-53 | 16 | 169 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 4e-53 | 16 | 169 | 17 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detectable in lateral root development when they reach 10 mm long. {ECO:0000269|PubMed:20197506}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed throughout the root cap, in both columella (COL) and lateral root cap (LRC) cells, with higher levels in the COL-adjoining LRC than the upper LRC. Also present at low levels expression in the tips of cotyledons and the cotyledon vasculature, as weel as in vasculature of the first pair of true leaves and at the hydathodes. {ECO:0000269|PubMed:20197506}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00431 | DAP | Transfer from AT4G10350 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v3752130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 9e-81 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027356409.1 | 0.0 | protein BEARSKIN2-like | ||||
Swissprot | Q9SV87 | 1e-154 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | A0A0L9V9I3 | 0.0 | A0A0L9V9I3_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A0S3SEU2 | 0.0 | A0A0S3SEU2_PHAAN; Uncharacterized protein | ||||
STRING | GLYMA12G00540.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8752 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 1e-152 | NAC domain containing protein 70 |
Publications ? help Back to Top | |||
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