PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v3557030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | GRAS | ||||||||
Protein Properties | Length: 228aa MW: 25025.1 Da PI: 7.3054 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 52.3 | 1.1e-16 | 81 | 157 | 3 | 79 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseela 79 lLl+cAe+v+ ++l a+ lL ++ el+sp g++ +R+ ayf++AL++r+++s+ ++y+ l +++ + ++s++ ++ Lj3g3v3557030.1 81 GLLLQCAECVAMDNLDFANDLLPEIAELSSPFGTSPERVGAYFAQALQSRVVSSCLGTYSPLMAKSVTLTQSQRIIF 157 58**********************************************************99888887666666555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 10.881 | 53 | 228 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.8E-14 | 81 | 157 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MLQSLIPRSP LNSSKPTTMK TKRDDGGGGS DSAVDEHSFK RRNFSGEKAI EEGEAAHEED 60 QVLQPASSSG EEESTGLKLL GLLLQCAECV AMDNLDFAND LLPEIAELSS PFGTSPERVG 120 AYFAQALQSR VVSSCLGTYS PLMAKSVTLT QSQRIIFALP RQSSDLPGAR RRGSRPHHRP 180 RHHAGASMAG TVPHPRLASE EDPFVEDHRV RIHREKTRRF RELAWASV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-16 | 85 | 159 | 25 | 99 | Protein SCARECROW |
5b3h_A | 1e-16 | 85 | 159 | 24 | 98 | Protein SCARECROW |
5b3h_D | 1e-16 | 85 | 159 | 24 | 98 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.22025 | 0.0 | cell culture| floral bud| protoplast |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v3557030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015952735.1 | 2e-59 | scarecrow-like protein 23 | ||||
Refseq | XP_016187881.1 | 2e-59 | scarecrow-like protein 23 | ||||
Refseq | XP_025642717.1 | 2e-59 | scarecrow-like protein 23 | ||||
Refseq | XP_025686836.1 | 2e-59 | scarecrow-like protein 23 | ||||
TrEMBL | A0A445A7K9 | 5e-58 | A0A445A7K9_ARAHY; Uncharacterized protein | ||||
TrEMBL | A0A445E2L4 | 4e-58 | A0A445E2L4_ARAHY; Uncharacterized protein | ||||
STRING | XP_004505671.1 | 1e-54 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 2e-21 | GRAS family protein |