PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v3530640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 283aa MW: 31398.9 Da PI: 6.9388 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28.6 | 2.6e-09 | 7 | 56 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL l ++ +K++Ka+iL +++ +k+L Lj3g3v3530640.1 7 RKTQKADREKLRRDRLNEQFVELGNTLDPD----RPKNDKATILGDTIQLLKDL 56 6788999********************997....79**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 1.4E-12 | 6 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.798 | 6 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.18E-13 | 6 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.39E-6 | 7 | 60 | No hit | No description |
Pfam | PF00010 | 3.9E-7 | 7 | 56 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.4E-7 | 12 | 62 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MDCTAARKTQ KADREKLRRD RLNEQFVELG NTLDPDRPKN DKATILGDTI QLLKDLTSQV 60 GKLKDEYTML NEESRELAQE KNDLREEKAS LKSDIENLNN QYQQQLRSIY PWTAMDPSVM 120 MAPPPSYPYP VPMAVPPGPI PMQPYPFYAN QHPAVMPNPC STFVPYLAPN TLVEQQSTHY 180 VSPPLHPGSR SNVSGKQNSK NKSSRESKAD KNEDSTDVTT DLELKTPGSS ADQVLSSGER 240 KSSKLPRKDS SFTDGSSFGR CSSSHSVQDS SSSSVVGSKK SNE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.2924 | 0.0 | cell culture| pod| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v3530640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020238452.1 | 1e-161 | transcription factor bHLH121 | ||||
Refseq | XP_020238453.1 | 1e-161 | transcription factor bHLH121 | ||||
Refseq | XP_029131082.1 | 1e-161 | transcription factor bHLH121 | ||||
Refseq | XP_029131083.1 | 1e-161 | transcription factor bHLH121 | ||||
Swissprot | Q9LT23 | 2e-92 | BH121_ARATH; Transcription factor bHLH121 | ||||
TrEMBL | A0A371HYH7 | 1e-160 | A0A371HYH7_MUCPR; Transcription factor bHLH121 | ||||
STRING | XP_007133432.1 | 1e-156 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2282 | 33 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.1 | 9e-84 | bHLH family protein |
Publications ? help Back to Top | |||
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