PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3360870.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 408aa    MW: 44776.1 Da    PI: 6.7712
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3360870.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.6e-10213260455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Lj3g3v3360870.1 213 SHSLAERIRREKISERMKYLQDLVPGC----NKIAGKAGMLDEIINYVQSLQ 260
                      8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-16207278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.15E-10207264No hitNo description
Gene3DG3DSA:4.10.280.105.3E-17209276IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.32209259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-7213260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-9215265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MLHCLNTSGT VGGGGGGACS DMTVLERQRV SSKKWQHEQE HENQGYFCGG GADSALGEVV  60
ARSVKPDPGF ENGWPELGKF VVAGFGSGFD ASSAISRTCS NGDLVSATKK MMGSVSGKES  120
LKKRKADNKA QNSNSKVFVE SDSKDKRIKV SGEEGESKTT EKTSNKNTKS CTNRNSRETS  180
EDTSKENSKG SEVQNQKPEY IHVRARRGQA TDSHSLAERI RREKISERMK YLQDLVPGCN  240
KIAGKAGMLD EIINYVQSLQ RQVEFLSMKL AAVNPRLDFN IDELFVKEVF PACAQSFPSI  300
GMQSDMTNHP AYLQFNSAQQ LVSYCGGLVN NTEIIPTDMG VRRNMNVPVS MPETFLDSSC  360
FTQILPSLSW EGDFQNLQSV AFDQGRSSSF PSQPFTDLVE ASDLKMEM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.3490.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3360870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1451100.0BT145110.1 Lotus japonicus clone JCVI-FLLj-18F6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001340509.10.0basic helix-loop-helix transcription activator CIB1
RefseqXP_028187332.10.0transcription factor HBI1-like isoform X2
TrEMBLA0A445I0C80.0A0A445I0C8_GLYSO; Transcription factor bHLH49 isoform B
TrEMBLI1LJC60.0I1LJC6_SOYBN; Uncharacterized protein
STRINGGLYMA11G12450.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.16e-54cryptochrome-interacting basic-helix-loop-helix 1