PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj3g3v3336070.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Nin-like

Protein Properties

Length: 985aa MW: 108054 Da PI: 5.2262

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj3g3v3336070.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.1	4e-29	591	641	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Lj3g3v3336070.1 591 EKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 641 79***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.154	573	661	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-26	593	641	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.11E-21	879	969	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.8E-22	882	964	No hit	No description
PROSITE profile	PS51745	19.389	885	967	IPR000270	PB1 domain
SMART	SM00666	1.3E-18	885	967	IPR000270	PB1 domain
CDD	cd06407	1.77E-29	886	966	No hit	No description
Pfam	PF00564	3.5E-15	887	966	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 985 aa Download sequence Send to blast
MEDHLSPKGK GIGYSASFDG GMKNSASEDM FNNISELMNF DTYAGWCNSP SMTDPNLANG 60 LTPFVSVPYP PPDGLNLVEQ SSGPFFMTEA TGNYNDMQSS PSYGDRVVLQ QMENQFEFFD 120 VLNDTNNLDA KQKQSVPFQQ LNTSDMGNHI MSWSSSWSLD ERMLKALSFF KESAGGGILA 180 QVWVPVKHGD EFILSTSEQP YLLDHKLAGY REVSRTFTFS AEGKAGSCPG LPGRVFTSHV 240 PEWTSNVGYY NKTEYSRLEH AINHEVRGSI ALPISDPDSK VPCSAVLELV TTKEKSNFDR 300 ELEIVSQALQ HVHLRTITPP RLLPQSLSNN KRAALSEIID VLRAVCHAHR LPLALTWIPC 360 CYSEGIGDET ERIRIKEGHI SSNEKCVLCI EESACYINDK MVGGFVHACT EHHLEEGQGI 420 AGKALQSNHP FFYPDVKSYD ISEYPLVHHA RKYNLNAAVA IRLRSTYTND DDYILEFFLP 480 VNMTGSLEQQ LLLDNLSGTM QRICKSLRTV SDAELTGIES SQVGFQKEKV QGIFPISGRN 540 SQTASIGCDY DLDRKMYLKA TNLRNNGIEA ARSQAINGSR KQVEKKRSTV EKNVSLSVLQ 600 QYFSGSLKDA AKSIGVCPTT LKRICRQHGI SRWPSRKINK VNRSLKKIQI VLDSVQGMEG 660 GLKFDPCTGG FVAGGSIIQD ISAHKSILFP ERSAVKDTEP VVREVVSGVP PAPGSPGENS 720 AIELEDDGVC SVGNQLVHST SVLMSNSYEG ELKIDNASSA DGSEDSKSMA VDDVTKAQDC 780 PEQNSLGSVL EKEGDQWSLN KYGMGVENSI HDIVCNTNSS ISLIELSGDG GNGADEHNHP 840 TSSSMTDSSN GSGSMTLGCS SGSQSFENQK KSKAKSACVV DSGSKMVVKA TYRGDTIRFK 900 FDPSAGCFQL YEEVATRFKL QNGSFQLRYL DDEEEWVMMV NDSDLQECVE ILGDIGATCV 960 KFLVRDTTGV LRSRSSNSCF LSESS

Sequence ? help Back to Top

Protein Sequence Length: 985 aa Download sequence Send to blast

MEDHLSPKGK GIGYSASFDG GMKNSASEDM FNNISELMNF DTYAGWCNSP SMTDPNLANG  60
LTPFVSVPYP PPDGLNLVEQ SSGPFFMTEA TGNYNDMQSS PSYGDRVVLQ QMENQFEFFD  120
VLNDTNNLDA KQKQSVPFQQ LNTSDMGNHI MSWSSSWSLD ERMLKALSFF KESAGGGILA  180
QVWVPVKHGD EFILSTSEQP YLLDHKLAGY REVSRTFTFS AEGKAGSCPG LPGRVFTSHV  240
PEWTSNVGYY NKTEYSRLEH AINHEVRGSI ALPISDPDSK VPCSAVLELV TTKEKSNFDR  300
ELEIVSQALQ HVHLRTITPP RLLPQSLSNN KRAALSEIID VLRAVCHAHR LPLALTWIPC  360
CYSEGIGDET ERIRIKEGHI SSNEKCVLCI EESACYINDK MVGGFVHACT EHHLEEGQGI  420
AGKALQSNHP FFYPDVKSYD ISEYPLVHHA RKYNLNAAVA IRLRSTYTND DDYILEFFLP  480
VNMTGSLEQQ LLLDNLSGTM QRICKSLRTV SDAELTGIES SQVGFQKEKV QGIFPISGRN  540
SQTASIGCDY DLDRKMYLKA TNLRNNGIEA ARSQAINGSR KQVEKKRSTV EKNVSLSVLQ  600
QYFSGSLKDA AKSIGVCPTT LKRICRQHGI SRWPSRKINK VNRSLKKIQI VLDSVQGMEG  660
GLKFDPCTGG FVAGGSIIQD ISAHKSILFP ERSAVKDTEP VVREVVSGVP PAPGSPGENS  720
AIELEDDGVC SVGNQLVHST SVLMSNSYEG ELKIDNASSA DGSEDSKSMA VDDVTKAQDC  780
PEQNSLGSVL EKEGDQWSLN KYGMGVENSI HDIVCNTNSS ISLIELSGDG GNGADEHNHP  840
TSSSMTDSSN GSGSMTLGCS SGSQSFENQK KSKAKSACVV DSGSKMVVKA TYRGDTIRFK  900
FDPSAGCFQL YEEVATRFKL QNGSFQLRYL DDEEEWVMMV NDSDLQECVE ILGDIGATCV  960
KFLVRDTTGV LRSRSSNSCF LSESS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj3g3v3336070.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009710	0.0	AP009710.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT23H01, TM1768, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027354091.1	0.0	protein NLP9-like isoform X1
Refseq	XP_027354092.1	0.0	protein NLP9-like isoform X1
Refseq	XP_027354093.1	0.0	protein NLP9-like isoform X1
TrEMBL	A0A445HLK6	0.0	A0A445HLK6_GLYSO; Protein NLP8 isoform A
TrEMBL	I1LQB5	0.0	I1LQB5_SOYBN; Uncharacterized protein
STRING	GLYMA12G05390.4	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3464	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein