PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v3248370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 225aa MW: 24657.7 Da PI: 8.4866 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.6 | 9.5e-13 | 161 | 206 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ +k + +++L +Av+YIk+Lq Lj3g3v3248370.1 161 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTSDMLDLAVDYIKDLQ 206 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.939 | 155 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.01E-16 | 158 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.72E-13 | 159 | 210 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.3E-16 | 160 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.9E-12 | 161 | 211 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-9 | 161 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MGYAAIRGMG AFGAGSNKTE EAAFSPSARL QNPPNYSSGL LSPRAEIGSK SNTQNNPEAE 60 GFAETRGNEF PGFPWDDSAV MSENLSGQKR FRDDDVKPFS GLNAAESQNE TGGQAPAPLA 120 HHMSLPNTSA EMAAIEKFLK FSDSVPCKIR AKRGCATHPR SIAERVRRTK ISERMRKLQD 180 LVPNMDKQTN TSDMLDLAVD YIKDLQMQVQ TLSDCRAKCT CKHKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v3248370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027341342.1 | 1e-127 | transcription factor bHLH122-like isoform X2 | ||||
Refseq | XP_027341343.1 | 1e-127 | transcription factor bHLH122-like isoform X2 | ||||
Refseq | XP_027354536.1 | 1e-126 | transcription factor bHLH122-like isoform X1 | ||||
Swissprot | Q66GR3 | 1e-59 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | V7AEH4 | 1e-125 | V7AEH4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007131988.1 | 1e-125 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4185 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 4e-62 | bHLH family protein |
Publications ? help Back to Top | |||
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