PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3248370.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 225aa    MW: 24657.7 Da    PI: 8.4866
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3248370.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.69.5e-13161206655
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +++Er RR +i +++ +L++l+P+     +k  + +++L +Av+YIk+Lq
  Lj3g3v3248370.1 161 SIAERVRRTKISERMRKLQDLVPNM----DKQTNTSDMLDLAVDYIKDLQ 206
                      689*********************7....688*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.939155205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-16158219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.72E-13159210No hitNo description
Gene3DG3DSA:4.10.280.104.3E-16160217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-12161211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9161206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGYAAIRGMG AFGAGSNKTE EAAFSPSARL QNPPNYSSGL LSPRAEIGSK SNTQNNPEAE  60
GFAETRGNEF PGFPWDDSAV MSENLSGQKR FRDDDVKPFS GLNAAESQNE TGGQAPAPLA  120
HHMSLPNTSA EMAAIEKFLK FSDSVPCKIR AKRGCATHPR SIAERVRRTK ISERMRKLQD  180
LVPNMDKQTN TSDMLDLAVD YIKDLQMQVQ TLSDCRAKCT CKHKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3248370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027341342.11e-127transcription factor bHLH122-like isoform X2
RefseqXP_027341343.11e-127transcription factor bHLH122-like isoform X2
RefseqXP_027354536.11e-126transcription factor bHLH122-like isoform X1
SwissprotQ66GR31e-59BH130_ARATH; Transcription factor bHLH130
TrEMBLV7AEH41e-125V7AEH4_PHAVU; Uncharacterized protein
STRINGXP_007131988.11e-125(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]