PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3235440.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 164aa    MW: 18159.1 Da    PI: 6.6007
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3235440.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.26.3e-052345123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C++ Fs+   L  H++ H
  Lj3g3v3235440.1 23 YECNFCKRGFSNAQALGGHMNIH 45
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.3E-71950No hitNo description
Gene3DG3DSA:3.30.160.601.4E-52149IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.6142350IPR007087Zinc finger, C2H2
PROSITE patternPS0002802545IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MEPDHDQGDN EQGASKVTPP KSYECNFCKR GFSNAQALGG HMNIHRKDKA KLKQQSSNQT  60
QPSLEVHHQK NPELEEQNKP NLNLKYHHQQ DHVLLHMRQL PLFAESPISS GEAQILPQAQ  120
IQGEVQVVTS EGALSQGSSS DLDLELRLGP EPSSSGATGT RKFF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3235440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0925918e-33BT092591.1 Soybean clone JCVI-FLGm-11E20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456154.13e-49transcriptional regulator SUPERMAN
TrEMBLA0A072UWD48e-48A0A072UWD4_MEDTR; Putative transcription factor C2H2 family
STRINGAES889252e-44(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.11e-17C2H2 family protein