PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3235380.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family G2-like
Protein Properties Length: 298aa    MW: 32549.5 Da    PI: 7.1451
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3235380.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.33.9e-29116168255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      +rl+Wtp+LH+rFv++v++L G+++A+Pkti++lm+v+g+t+e+v+SHLQkYRl
  Lj3g3v3235380.1 116 ARLVWTPQLHKRFVDVVAHL-GIKNAVPKTIMQLMNVEGMTRENVASHLQKYRL 168
                      79******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.3E-29115173IPR009057Homeodomain-like
TIGRFAMsTIGR015577.0E-23116168IPR006447Myb domain, plants
SuperFamilySSF466894.84E-18116172IPR009057Homeodomain-like
PfamPF002496.5E-7118167IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGEEVRMMDE ERLMEWEKGL PSVHDLTPLS QPLIPPELAT AFSISPEPRR TLLDVNRASR  60
NTLSILRSGG APLQALSSSD EEGEGGGGGG EEDDTTDRDG SGGSGSRKQR KVDCAARLVW  120
TPQLHKRFVD VVAHLGIKNA VPKTIMQLMN VEGMTRENVA SHLQKYRLYL KRMQGLSNEG  180
PSSSDHLFAS TPVPQSLHDS AAAAVAATAH SNSHSQTHSH SHGHGNSSHL PVPIPMPYPP  240
PMMSMPFHGM PHLHHGHGHM GMPLPSSSAT SSYRSQYPFN MLHQRDWPHP HLAPNDNK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-31117171357Transcription factor LUX
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.140340.0cell culture| protoplast
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is essential for the generation of the circadian clock oscillation. Is necessary for activation of CCA1 and LHY expression. Is coregulated with TOC1 and seems to be repressed by CCA1 and LHY by direct binding of these proteins to the evening element in the LUX promoter. Directly regulates the expression of PRR9, a major component of the morning transcriptional feedback circuit, by binding specific sites on PRR9 promoter. Binds to its own promoter, inducing a negative auto-regulatory feedback loop within the core clock. Binds to ELF3 and associates with ELF4 in a diurnal complex which is required for the expression of the growth-promoting transcription factors PIF4 and PIF5 and subsequent hypocotyl growth in the early evening. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:21236673, ECO:0000269|PubMed:21753751, ECO:0000269|PubMed:22311777}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00014PBMTransfer from AT3G46640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3235380.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian oscillation with peaks at subjective dusk. {ECO:0000269|PubMed:16006522, ECO:0000269|PubMed:16164597, ECO:0000269|PubMed:17132630, ECO:0000269|PubMed:21753751}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-76AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017406245.11e-119PREDICTED: transcription factor PCL1-like
SwissprotQ9SNB45e-71PCL1_ARATH; Transcription factor LUX
TrEMBLA0A0L9T7Z01e-118A0A0L9T7Z0_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SDA01e-118A0A0S3SDA0_PHAAN; Uncharacterized protein
STRINGVIT_06s0004g05120.t011e-112(Vitis vinifera)
STRINGGLYMA12G06406.21e-112(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69573347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59570.16e-59G2-like family protein
Publications ? help Back to Top
  1. Higham CF,Husmeier D
    A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana.
    BMC Bioinformatics, 2013. 14 Suppl 10: p. S3
    [PMID:24267177]