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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v3155130.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 208aa MW: 23681.6 Da PI: 4.645 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.7 | 8.2e-16 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l +++ ++G++ W++Iar+++ gRt++++k++w++++ Lj3g3v3155130.1 2 TPQEERLVTELHSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 43 9*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 2.88E-12 | 1 | 43 | No hit | No description |
SMART | SM00717 | 3.8E-11 | 1 | 45 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 24.286 | 1 | 47 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.69E-12 | 2 | 48 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.3E-14 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.0E-20 | 2 | 44 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MTPQEERLVT ELHSKWGNRW SRIARKLPGR TDNEIKNYWR THMRKKKAQE KEKKRAAEAA 60 SSSSPADSSS CESSLTSNNH GVDSHASKEA GEEDSFYDTG GAHNMNNVHV IGEDHQDGGD 120 DQGYSMDDIW KDIAMSEDEN FNLQPVFDGY SEEGCNFSYP PLFSPSWDYS SDPLWVMDDE 180 ERKMLFPLSH DHQSLSFYGD QGRTFLTG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.26089 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v3155130.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN863535 | 0.0 | JN863535.1 Lotus japonicus R2R3MYB transcription factor (MYB59) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003606617.1 | 2e-68 | transcription factor MYB59 isoform X2 | ||||
TrEMBL | I3RSY5 | 1e-105 | I3RSY5_LOTJA; R2R3MYB transcription factor (Fragment) | ||||
STRING | AES88812 | 2e-66 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4378 | 33 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.2 | 8e-41 | myb domain protein 48 |