PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v3154040.1
Common Namendx1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HB-other
Protein Properties Length: 658aa    MW: 72648.9 Da    PI: 5.3525
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v3154040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.71.2e-05431491154
                      TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 
                      +rkRt +++eq+   e++   ++ +  +a++ +  A+kl     ++t +q+k+W  Nr+a+
  Lj3g3v3154040.1 431 KRKRTIMNDEQVMLIERALLDEPDMqrNAASLQSWADKLslhgsDVTPSQIKNWLNNRKAR 491
                      79****************99866661166789*******999999***************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.9E-5416492IPR009057Homeodomain-like
SuperFamilySSF466892.74E-5427498IPR009057Homeodomain-like
PROSITE profilePS5007111.143428495IPR001356Homeobox domain
SMARTSM003892.9E-6430499IPR001356Homeobox domain
CDDcd000861.63E-6431495No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MLSILLILCE AESLSFLDEV ASSQQSLDLA KSVALEVFDL LKTTFGRNPG HFTTADRSYP  60
MGHLQLNAMR LADIFSDDSN FRSYMTVCFT KVLTAIISLS HGDFLSCWCS SNLPEIEEDA  120
SLEYDTFAAV GWVLDNTSSQ DLPNATILEF NLVPNRVSSV SYAHHRTSFF VKIIANLHCF  180
VPNICEEQER NLFVLKVLEY LQMDLSNLLP GFSFASDVPK AATVSKNLRS LLSHAESLIP  240
KFLNEEDVHL LRVFLGELQS LFTSTGIGGN HVQDNKFEEL SWDKFSKLVN KHYQEAHSTA  300
RCSSLIQQEP SELSKKGGNL KEGMSENSSF PGTGQCTTRA EITNLGNDLS RQDQVEDKDI  360
AGKTVSRGAR DFDKDCQNAE TSSSDTSSAK GKSVIDHMDS GELSKSVAHP KKVTVGETPE  420
DEKVETVPRR KRKRTIMNDE QVMLIERALL DEPDMQRNAA SLQSWADKLS LHGSDVTPSQ  480
IKNWLNNRKA RLARTAKDVP AADVAKSVPD KPRGPSLGPY ASPDNYGDAS NARQDLLSLA  540
KIASGDNPEP SLAELKAELV DAPPEIVRCN VGQHVVLTDT RGKEIGRGKV VQVQGKWYAK  600
SLEESETYVV DVIELKTDKE TRVPYPSEAT GTSFAEAASK LGVMRVLWSP RRIIALQS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1428433RRKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.58490.0pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v3154040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ0118280.0AJ011828.1 Lotus japonicus mRNA for NDX1 homeobox protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020223108.10.0nodulin homeobox isoform X1
TrEMBLQ9ZRY40.0Q9ZRY4_LOTJA; NDX1 homeobox protein
STRINGXP_007150278.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF386946