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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v2926340.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | YABBY | ||||||||
Protein Properties | Length: 177aa MW: 20051.8 Da PI: 8.6178 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 206.2 | 1.2e-63 | 6 | 157 | 5 | 169 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 ++e+vCyv+CnfCntilavsvP+++l+++vtvrCGhC++llsvnl ++ + + +++++l +ee + k +++++++t Lj3g3v2926340.2 6 MATERVCYVHCNFCNTILAVSVPHSTLLTIVTVRCGHCSNLLSVNLGAFQAFPPQDPQ-------PQKQHLSFEEPSNKDLGSSSKCHKTAAFE 92 579*******************************************998777666665.......56666777766666665555555544433 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 ++e pr+pp irP ekr rvPsaynrfikeeiqrika+nPdishreafs aaknWahfP+ihf Lj3g3v2926340.2 93 -----PVEREQPRIPP-IRPAEKRHRVPSAYNRFIKEEIQRIKATNPDISHREAFSSAAKNWAHFPHIHFA 157 .....45788899999.9***************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.8E-68 | 7 | 157 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 9.43E-8 | 104 | 153 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.0E-5 | 109 | 152 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MSMDMMATER VCYVHCNFCN TILAVSVPHS TLLTIVTVRC GHCSNLLSVN LGAFQAFPPQ 60 DPQPQKQHLS FEEPSNKDLG SSSKCHKTAA FEPVEREQPR IPPIRPAEKR HRVPSAYNRF 120 IKEEIQRIKA TNPDISHREA FSSAAKNWAH FPHIHFAKQA KLDHQGEGTE KTMNGFY |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v2926340.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090811 | 1e-164 | BT090811.1 Soybean clone JCVI-FLGm-5K20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027346217.1 | 1e-107 | putative axial regulator YABBY 2 | ||||
Refseq | XP_027346218.1 | 1e-107 | putative axial regulator YABBY 2 | ||||
Swissprot | Q9XFB0 | 6e-70 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A445HP14 | 1e-105 | A0A445HP14_GLYSO; Putative axial regulator YABBY 2 isoform B | ||||
STRING | GLYMA12G10210.3 | 1e-103 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 4e-56 | YABBY family protein |
Publications ? help Back to Top | |||
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