PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v2887030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 156aa MW: 17940.7 Da PI: 4.4404 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.7 | 3.6e-10 | 10 | 34 | 22 | 47 |
T-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqky 47 g+W++Ia+ m+ gR+++++k++w++ Lj3g3v2887030.1 10 GRWSAIAAQMP-GRSDNEIKNHWHTN 34 45*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.527 | 1 | 39 | IPR017930 | Myb domain |
CDD | cd00167 | 4.41E-7 | 9 | 35 | No hit | No description |
SuperFamily | SSF46689 | 5.69E-9 | 10 | 46 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.7E-8 | 10 | 34 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-12 | 10 | 47 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MQLKLFLCTG RWSAIAAQMP GRSDNEIKNH WHTNLKKRYQ HSSITKSQVS KPNDHSPVQE 60 TANNINGPFE TLQITQLADS SSPESSSTNM EYTNVTNNDD YNLDREVEFA FLDSDRYGDM 120 ISGNFWFEPY MLDISYAKSS ENFECFSPVF DAELWS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.9053 | 0.0 | floral bud| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v2887030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009750 | 0.0 | AP009750.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT47O18, TM1899, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027348210.1 | 1e-36 | transcription factor MYB13-like | ||||
TrEMBL | A0A371EPQ0 | 7e-36 | A0A371EPQ0_MUCPR; Transcription factor MYB13 (Fragment) | ||||
STRING | GLYMA06G45554.1 | 5e-33 | (Glycine max) | ||||
STRING | GLYMA12G11330.2 | 5e-33 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06180.1 | 1e-12 | myb domain protein 13 |