PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v2848980.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 27240.1 Da PI: 6.7962 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.7 | 4.1e-13 | 57 | 103 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riN +++Lr+++P a K++Ka+ L +++ ++k+L Lj3g3v2848980.1 57 RNHSEAERRRRARINAHLDTLRTVIPGA-----NKMDKASLLAEVITHLKEL 103 58*************************8.....6****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.29E-14 | 47 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.018 | 54 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.0E-11 | 57 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.4E-14 | 58 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-12 | 60 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.80E-4 | 67 | 105 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 1.0E-5 | 142 | 185 | No hit | No description |
SuperFamily | SSF55021 | 3.66E-5 | 142 | 219 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MEMEAFTHFQ VSSGVIGSGY ASSSSLVLDR DKGELVEAPM QLERKGVSPE RSIEALRNHS 60 EAERRRRARI NAHLDTLRTV IPGANKMDKA SLLAEVITHL KELKTNAAQA SEGLMIPKDN 120 DEIRVEEQEG GLNGFPYSIR ASLCCEYKPG LLSDIRQALD ALHLMIMRAE IATLGGRMKN 180 VFVIISCKEQ NFEDAEYRQF LAGSVHQALR SVLDRFSVSQ DILESRKRRR ISIFSSTSLE 240 DFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 225 | 229 | RKRRR |
2 | 226 | 230 | KRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v2848980.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT143432 | 0.0 | BT143432.1 Lotus japonicus clone JCVI-FLLj-19P22 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027343938.1 | 1e-151 | transcription factor bHLH30-like | ||||
TrEMBL | I3SSI4 | 1e-165 | I3SSI4_LOTJA; Uncharacterized protein | ||||
STRING | GLYMA12G14400.1 | 1e-142 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10685 | 25 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 9e-32 | bHLH family protein |