PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2848980.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 243aa    MW: 27240.1 Da    PI: 6.7962
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2848980.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.1e-1357103354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r+h+e+ErrRR+riN  +++Lr+++P a      K++Ka+ L +++ ++k+L
  Lj3g3v2848980.1  57 RNHSEAERRRRARINAHLDTLRTVIPGA-----NKMDKASLLAEVITHLKEL 103
                      58*************************8.....6****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.29E-1447106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.01854103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-1157103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-1458124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1260109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.80E-467105No hitNo description
Gene3DG3DSA:3.30.70.2601.0E-5142185No hitNo description
SuperFamilySSF550213.66E-5142219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEMEAFTHFQ VSSGVIGSGY ASSSSLVLDR DKGELVEAPM QLERKGVSPE RSIEALRNHS  60
EAERRRRARI NAHLDTLRTV IPGANKMDKA SLLAEVITHL KELKTNAAQA SEGLMIPKDN  120
DEIRVEEQEG GLNGFPYSIR ASLCCEYKPG LLSDIRQALD ALHLMIMRAE IATLGGRMKN  180
VFVIISCKEQ NFEDAEYRQF LAGSVHQALR SVLDRFSVSQ DILESRKRRR ISIFSSTSLE  240
DFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225229RKRRR
2226230KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2848980.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1434320.0BT143432.1 Lotus japonicus clone JCVI-FLLj-19P22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027343938.11e-151transcription factor bHLH30-like
TrEMBLI3SSI41e-165I3SSI4_LOTJA; Uncharacterized protein
STRINGGLYMA12G14400.11e-142(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106852538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.19e-32bHLH family protein