PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v2720020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 428aa MW: 47422.7 Da PI: 6.5115 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.8 | 3.8e-08 | 333 | 373 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++++P K++ a++L +A +Y+k L Lj3g3v2720020.1 333 ARQRRERISDRIRVLQKIVPGG-----SKMDTASMLDEAANYLKFL 373 69******************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.888 | 324 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.05E-13 | 330 | 389 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.30E-11 | 330 | 378 | No hit | No description |
SMART | SM00353 | 1.8E-12 | 330 | 379 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.0E-11 | 332 | 382 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-5 | 333 | 373 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MEGLNWDPTP SHLAANTPIL WSSQQQQQEF EGGYPISSLT SSVLNQIQDM QKPPQTFHAN 60 SNPERLIYQS SVASSTSSDQ IMDVIHHIHN TNISHHAATT MSVKSGPLTS QSHPFFSNYN 120 ITDFNMVHQQ RLINGSQQNS LDCLLSATNS NTDTSVEDDG ISMILPDCGN LWNFSHGSAA 180 ASSGESETNA SNGTKNKHME FQVNEPVQTV SQSSSDQLKP KRRNNQSSDD QYFTMLENSP 240 IEGGFRLISE NPPKCKKPRW EKGSCSSSNI NFQQPNSSSS IEEPDPEAIA QMKEMIYRAA 300 AFRPVSLLGL EEVAEKPKRK NVKISSDPQT VAARQRRERI SDRIRVLQKI VPGGSKMDTA 360 SMLDEAANYL KFLRSQVKAL ESLGNKVSTA MDYCSPSSIA FSFNPSFPMQ MKDDYQLPSS 420 HPPFPGLK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 333 | 338 | RQRRER |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v2720020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010548 | 0.0 | AP010548.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT22C05, TM1867a, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027337310.1 | 1e-163 | transcription factor bHLH87-like | ||||
Swissprot | Q8S3D2 | 4e-76 | BH087_ARATH; Transcription factor bHLH87 | ||||
TrEMBL | C0JP16 | 0.0 | C0JP16_LOTJA; Putative basic helix-loop-helix protein BHLH11 | ||||
STRING | GLYMA07G01611.1 | 1e-150 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4530 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 5e-66 | bHLH family protein |
Publications ? help Back to Top | |||
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