PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2718820.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 106aa    MW: 12008.9 Da    PI: 11.3829
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2718820.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-091858954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      r+RR+ri +++  L++++P        K++ a++L +A +Y+k L
  Lj3g3v2718820.1 18 ARQRRERISERIRALQKIVPGG-----SKMDTASMLDEAANYLKFL 58
                     69******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.32958IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-151473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-131564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-131771IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-61858IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.09E-53163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MPKRKNVRVS TDPQTVAARQ RRERISERIR ALQKIVPGGS KMDTASMLDE AANYLKFLRS  60
QVKALENLGN KLDSMKCPPT SIAFSFNPSF PMQTHFPVQN PRGHIQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11823RQRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2718820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-101AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027343431.12e-62transcription factor bHLH87-like
SwissprotQ8S3D26e-40BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A151SU652e-55A0A151SU65_CAJCA; Transcription factor bHLH87
TrEMBLA0A445IEW82e-54A0A445IEW8_GLYSO; Transcription factor bHLH87
TrEMBLK7M3P82e-54K7M3P8_SOYBN; Uncharacterized protein
STRINGGLYMA13G42900.23e-55(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-30bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]