PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v2657800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | NF-YA | ||||||||
Protein Properties | Length: 303aa MW: 33151.2 Da PI: 9.0639 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 105.1 | 6.1e-33 | 140 | 196 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rakle+++kl +k+rkpylheSRh hA++R+RgsgGrF Lj3g3v2657800.1 140 EEPIYVNAKQYHAILRRRQYRAKLEAQNKL-AKNRKPYLHESRHLHAMKRARGSGGRF 196 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.4E-37 | 138 | 199 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.689 | 139 | 199 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.4E-28 | 141 | 196 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.1E-24 | 142 | 164 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 144 | 164 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 2.1E-24 | 173 | 196 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MKMSSLPQQC HQTKPLSLKF QDQDSCSTQS TGQSYPKVGS AQSGQISVQY SNSSDCSTVS 60 KTGEESVEGF IRSSAVTRDF TFPPSQLSYN QSLANIAFHH AEPCFSGLLA APYGPQPNIH 120 HAQLIGMAPV RIPLPLDLCE EPIYVNAKQY HAILRRRQYR AKLEAQNKLA KNRKPYLHES 180 RHLHAMKRAR GSGGRFLNTK KLQESKLTSK NHGFGASNCT QLNLSGNMSE SEVGRVENYG 240 DGVSATTCSD VTSGSNSDCI LKQQELEFRL CGYPSHIGRN MQGYAANMGS GGGANQHHLS 300 VLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 6e-23 | 139 | 200 | 1 | 62 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.20505 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v2657800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027336865.1 | 1e-157 | nuclear transcription factor Y subunit A-3-like isoform X2 | ||||
TrEMBL | A0A1S2YV67 | 1e-152 | A0A1S2YV67_CICAR; nuclear transcription factor Y subunit A-3 isoform X1 | ||||
STRING | XP_004510428.1 | 1e-153 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10120 | 25 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 1e-67 | nuclear factor Y, subunit A3 |