PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v2634550.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 467aa MW: 52097.6 Da PI: 8.1711 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.8 | 1.1e-07 | 356 | 404 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v + G g W+ I r Rt ++k++w+++l Lj3g3v2634550.2 356 AWTLVEVMKLVEGVSRCGAGKWSEIKRLSFssaSYRTSVDLKDKWRNLL 404 7**************************99999*99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.472 | 349 | 408 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.2E-12 | 351 | 411 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.7E-8 | 353 | 406 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.63E-19 | 355 | 405 | No hit | No description |
SuperFamily | SSF46689 | 3.91E-15 | 355 | 414 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence Send to blast |
MVDEEICLDK LSIRELHELF KVTFGRETTV KDKQWLKRRI SMSLTNSCDV SATTFIVKDN 60 KMIRKCEEDC SGNVNAADVI SVENVAGEED SKFKDSSAVE DCGFENNPSV TESSLENLNM 120 EHELSGEDHL REQRAAKRMR RPTKRYIEEL SENESREHNP RLPSSNKNMG FGHVSPTSCA 180 RPAGNAFPEA RTFITRLDSL GGSGIQIPCV SRVRRSRPRK NLTSLMKTPS LFQKFHPTGV 240 GEAAELGCKV LREHGSDGGE SQDCGESQDG GESQDQVLKP RPSCEKVHQP FASEPVQEKQ 300 CSAIGTTELQ QELRPKREEP KREEPKREEP SSHPSEDNIV TVPTAKGGMR RKHHRAWTLV 360 EVMKLVEGVS RCGAGKWSEI KRLSFSSASY RTSVDLKDKW RNLLKASYAQ TPADVGMKKH 420 GTVPIPEPIL VRVRELAERN SQVPSSYISS KSKAGAGVVY GDRSGYL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 213 | 219 | RRSRPRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v2634550.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235913 | 4e-83 | AC235913.2 Glycine max clone GM_WBc0225O09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027335041.1 | 0.0 | uncharacterized protein LOC113849369 isoform X3 | ||||
Refseq | XP_027335042.1 | 0.0 | uncharacterized protein LOC113849369 isoform X4 | ||||
TrEMBL | A0A2Z6NGL2 | 0.0 | A0A2Z6NGL2_TRISU; Uncharacterized protein | ||||
STRING | AET01729 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 3e-82 | TRF-like 6 |