PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v2576170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | Trihelix | ||||||||
Protein Properties | Length: 372aa MW: 40924.5 Da PI: 9.8344 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 50.5 | 5.3e-16 | 79 | 168 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Liea e+ +l+rg+lk+++W+ev++ + + ++ +qCk++++ ++k+yk +k+ + +++s++p++d+l+ Lj3g3v2576170.1 79 CWSEGATAVLIEAWGERYLELSRGNLKQKHWKEVAEIVsgreDYLKTPKTDIQCKNRIDTVKKKYKSEKAKISAAGGGTTSKWPFYDRLD 168 7*************************************96444455567888*******************999999999********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.3E-26 | 77 | 170 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0010431 | Biological Process | seed maturation |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MEVINDDDEI EFRRSPASGS PPSSNGRITV TVAAPAPQAH PHPAPNTLAL ALPVQQPVKG 60 SNGGGGSAGG GGGGGREDCW SEGATAVLIE AWGERYLELS RGNLKQKHWK EVAEIVSGRE 120 DYLKTPKTDI QCKNRIDTVK KKYKSEKAKI SAAGGGTTSK WPFYDRLDQL IGPTAKIPAG 180 NSNSQQQKLP LGIPVGVRSG GGASSQYNSQ KQHQQQQEQE EDVELKNQKM QYRRRPPPVD 240 SDSSEREVVS PVSSDSYPPG RYERKRARVM NSRGGRKGKG WGSAVRELTQ AILKFGDAYE 300 QAETSKLQQV VEMEKQRMKF AKDLELQRMQ FFMKTQMEIS QLKLARKEGG NPSNHHSNNN 360 DSNNHSNNSD TE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.10139 | 0.0 | cell culture| pod| protoplast |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00356 | DAP | Transfer from AT3G14180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v2576170.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 6e-57 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027908037.1 | 1e-154 | trihelix transcription factor ASIL2-like | ||||
Swissprot | Q9LJG8 | 1e-97 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A2K3MVG5 | 1e-157 | A0A2K3MVG5_TRIPR; Putative basic-leucine zipper transcription factor e-like protein | ||||
STRING | XP_007135401.1 | 1e-150 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7919 | 30 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14180.1 | 6e-50 | sequence-specific DNA binding transcription factors |