PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2517670.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 379aa    MW: 43323 Da    PI: 5.8693
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2517670.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13184235155
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Lj3g3v2517670.1 184 QRMTHIAVERNRRRQMNDHLSVLRSLMPPS---YIQRGDQASIIGGAIDFVKELE 235
                      79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.46E-12182239No hitNo description
SuperFamilySSF474595.5E-17183251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.751183234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-10184235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-14184250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-10189240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MMERLQGPIN SCFFGEHLEV NCLEQALVEA ESLRLEEEQH LLISTLEDNM PFLQMLQSVE  60
YHPQQFFPLK EPSFQTLLRL QHLKKPWELE NQTQAQAAFE QLESCVTHDM LEMQSPVKSE  120
SNYELQQQQH THSASCVEKL SYECNQEEPL KTEQSCLKSQ HATRERRKRK RTRLTKNKED  180
VENQRMTHIA VERNRRRQMN DHLSVLRSLM PPSYIQRGDQ ASIIGGAIDF VKELEQLVQS  240
LESQKRMRKN EEACSSSSVF SKPPSDSSPS HGFGMRSSSS TEGDEVKAEN KSESADIKVT  300
LIQSHVNLKI ECERKPGQLI KVIVALEDLR LTILHLNITS SEASVIYSLN LKIEEDCMLG  360
SANDIAEAVH HILSIINGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170RRKRKR
2184195RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.260503e-93cell culture
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2517670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0066370.0AP006637.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT47I16, TM0208b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027335453.10.0transcription factor bHLH67
TrEMBLI1KHN80.0I1KHN8_SOYBN; Uncharacterized protein
STRINGGLYMA07G05500.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.11e-81bHLH family protein