PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v2477690.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Dof
Protein Properties Length: 272aa    MW: 29737.1 Da    PI: 8.5576
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v2477690.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.81.3e-392180261
           zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                     ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknkk+
  Lj3g3v2477690.2 21 PQEQINCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKKV 80
                     6899*****************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-272079IPR003851Zinc finger, Dof-type
PfamPF027012.0E-332379IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.9662579IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102763IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEGIDPNSCV NRTVMEKKTR PQEQINCPRC NSTNTKFCYY NNYSLTQPRY FCKTCRRYWT  60
EGGSLRNVPV GGGSRKNKKV LTSSAAAAAA AAASSKAIPD LNPQPTTLSS SVSNSQNPKM  120
HGGQDLNLAF PPMENYHHHH GMVPYVEMHN GGDHSSSSAP TNSLSALELL RYSMASRGMN  180
PYAPNNSLMP NTNSLYPSGF PMQEVKPSLG FSVDGIGNRS YEHQVQESGG GGRLLFPFGD  240
HVKQLSAEQV EQNKEQGNST GYWTGMMGEG SW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.139270.0cell culture| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
UniprotTISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v2477690.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1443330.0BT144333.1 Lotus japonicus clone JCVI-FLLj-13E12 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027335554.11e-127dof zinc finger protein DOF2.5-like
RefseqXP_027335555.11e-127dof zinc finger protein DOF2.5-like
RefseqXP_028239369.11e-126dof zinc finger protein DOF2.5-like
RefseqXP_028239370.11e-126dof zinc finger protein DOF2.5-like
SwissprotQ433852e-62DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLI3SV350.0I3SV35_LOTJA; Uncharacterized protein
STRINGGLYMA07G05950.11e-126(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.49e-63Dof family protein