PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

ERF

Protein Properties

Length: 217aa MW: 24012.8 Da PI: 7.2166

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj3g3v2315340.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.6	6.5e-18	64	113	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f+t+e+Aa+a++ a++ ++g Lj3g3v2315340.1 64 VYHGVRKRN-WGKWVSEIREPRK---KSRIWLGSFDTPEKAARAHDVAALTIKG 113 69**887.******843...6********************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	5.3E-31	63	122	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	2.94E-21	64	122	IPR016177	DNA-binding domain
SMART	SM00380	1.5E-33	64	127	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.879	64	121	IPR001471	AP2/ERF domain
Pfam	PF00847	5.4E-12	64	113	IPR001471	AP2/ERF domain
CDD	cd00018	6.52E-31	65	122	No hit	No description
PRINTS	PR00367	9.0E-10	65	76	IPR001471	AP2/ERF domain
PRINTS	PR00367	9.0E-10	87	103	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MTLTNPSETS TTATTTTTTT TSSSTSSPQS PSHSLHKTET PQKQSTTQKQ STRKRPRDCS 60 EHRVYHGVRK RNWGKWVSEI REPRKKSRIW LGSFDTPEKA ARAHDVAALT IKGPSAILNF 120 PHIADMLPKP ATSSPHDIQV AASAAAAMVD FDTTTSPPSS LSSSESSEEL SEIVELPKIE 180 DWVDNSRDEF ILVDLVESWV YPPSMGLEGN RVLRCFF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-21	59	126	9	77	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj3g3v2315340.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028238904.1	2e-76	dehydration-responsive element-binding protein 3-like
Swissprot	Q9LYD3	8e-50	DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBL	A0A0B2P988	4e-75	A0A0B2P988_GLYSO; Dehydration-responsive element-binding protein 3
STRING	GLYMA07G02001.1	2e-75	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G25810.1	9e-42	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Galuschka C,Schindler M,Bülow L,Hehl R AthaMap web tools for the analysis and identification of co-regulated genes. Nucleic Acids Res., 2007. 35(Database issue): p. D857-62 [PMID:17148485]