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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v2060630.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | ERF | ||||||||
Protein Properties | Length: 213aa MW: 24002.4 Da PI: 4.8643 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.8 | 5e-17 | 25 | 76 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I +s +k+ +lg++ t eeAa a+++a+ k++g Lj3g3v2060630.2 25 SKYRGVARHHHNGRWEARIGRVSG---NKYLYLGTYATQEEAAIAYDRAAIKYRG 76 89****99**********999754...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.51E-26 | 25 | 86 | No hit | No description |
Pfam | PF00847 | 1.9E-12 | 25 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-18 | 25 | 86 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.057 | 26 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.4E-27 | 26 | 90 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.6E-19 | 26 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-5 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-5 | 66 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MEGQSKEEYI GSLRRRSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVSGNK YLYLGTYATQ 60 EEAAIAYDRA AIKYRGLNAI TNFDLSRYIK LLRPQTQDSN NHQDQTSNQE LEVEFVSDEL 120 GSTTGETAQD DAVSTSSTIG LLLQPFKFKE MLEKTSSALA PVESTTLPRR TFPEDIQTIF 180 ENEDSSIYTE NDDIIFGDLS SIAAPIFHFE LDT |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.25411 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v2060630.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027344774.1 | 1e-103 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 2e-61 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A371FJW5 | 7e-97 | A0A371FJW5_MUCPR; AP2-like ethylene-responsive transcription factor (Fragment) | ||||
STRING | cassava4.1_021785m | 2e-91 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1300 | 34 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.2 | 1e-52 | ARIA-interacting double AP2 domain protein |
Publications ? help Back to Top | |||
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