PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v1666020.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 274aa    MW: 31248.1 Da    PI: 4.5748
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v1666020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.56.7e-15172271199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                      f+kv t+sd+   + l+lp  ++++h  ++ +   ++l++++gr++  +l+  +++g+    + ++k W++Fvk+n+Lk gD+v F+ d+  + 
  Lj3g3v1666020.1 172 FDKVITKSDSKGDQTLSLPMMYVRNHVRPNWQ--HVVLQTPEGRTYACELKR-RNPGEddtpCNIGKDWNKFVKENKLKRGDTVHFRPDSVANN 262
                      89************************777666..6***************65.44444479999***********************9887777 PP

                      ..EEEEE-S CS
               B3  91 elvvkvfrk 99 
                        +v+++r+
  Lj3g3v1666020.1 263 MIYVSIIRR 271
                      788888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0717106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-719104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-826110IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-15171272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-17171271IPR015300DNA-binding pseudobarrel domain
PfamPF023625.1E-13172271IPR003340B3 DNA binding domain
PROSITE profilePS5086311.998172272IPR003340B3 DNA binding domain
CDDcd100176.85E-12172270No hitNo description
SMARTSM010191.8E-9172272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSPVQKYALK PSTWPDFSVE LDPKMEHLQV PSDFYEKHKT ALGDRVVIMD PVGGEFSFRL  60
LAGNLGGLIF ECVAEFLRRY GLKENHLCDF FYFGKNTFIV KILDGTLKEI SYGVGTSLSQ  120
PIVIDDGDEE AVDDEDPVGD DEDAEEDEED DGIMEVSEGE EENGVNRVLH PFDKVITKSD  180
SKGDQTLSLP MMYVRNHVRP NWQHVVLQTP EGRTYACELK RRNPGEDDTP CNIGKDWNKF  240
VKENKLKRGD TVHFRPDSVA NNMIYVSIIR RKQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v1666020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061270.0AP006127.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT48O21, TM0211, complete sequence.