PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj3g3v1663540.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 256aa    MW: 28659.7 Da    PI: 6.6715
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj3g3v1663540.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.6e-1270116354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+e+ErrRR+riN  +++Lr ++P a      K++Ka+ L ++ +++k+L
  Lj3g3v1663540.1  70 KNHSEAERRRRARINAHLDTLRNVIPGA-----MKMDKASLLGEVLRHLKDL 116
                      58*************************9.....7****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.31367116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-1070116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-1370119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-1370118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-1173122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.87E-4155226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEAFDWDCGI LGDAPKRISD GFEVNNGVNG SGYGSPLSLV LDRERGELVE APAKLERKGV  60
SNERSIDALK NHSEAERRRR ARINAHLDTL RNVIPGAMKM DKASLLGEVL RHLKDLKRNA  120
AQDCEGLMIP KDNDEINVEE QEGGLNGFPY SIRASLCCEY KPGLLSNIRQ ELDSLHLMII  180
KADIATLGSR MKNVLVIISC EERNFEDAEY RQFLAGSVHQ ALRSVLNRFC VSQEVIGTKK  240
RRRISIFSSS SLEDFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239243KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj3g3v1663540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937011e-168BT093701.1 Soybean clone JCVI-FLGm-17L23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003539965.11e-152transcription factor bHLH30
RefseqXP_028194026.11e-152transcription factor bHLH30-like
TrEMBLA0A0B2PJ881e-151A0A0B2PJ88_GLYSO; Transcription factor bHLH30
TrEMBLI1LSB41e-151I1LSB4_SOYBN; Uncharacterized protein
STRINGGLYMA12G14400.11e-152(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106852538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-28bHLH family protein