PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj3g3v1618350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | C2H2 | ||||||||
Protein Properties | Length: 430aa MW: 47124.8 Da PI: 9.1604 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00037 | 196 | 218 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ Fs ++ + H + H Lj3g3v1618350.1 196 TCHKCGEQFSKWEAAEAHHLSkH 218 7*****************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 197 | 218 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 1.04E-21 | 220 | 429 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 8.6E-8 | 227 | 406 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MPTVWFSLKR SLHCKSEPTD VHVPKSRKHL ATILTKRAGT GRSGCSRSIA NLKDVIHGSK 60 RHLEKPPSCS PRSIGSSEFL NPITHEVILS NSRCELKITG YGGFQEGGVA SDGNNNGGET 120 GDSTFVGTLR PGTPGPGGHP TMHYFNPSYK TPATPPRKLS PFLSSDKEGS GFHGAGFHSS 180 HRLSLETDSN GPCNVTCHKC GEQFSKWEAA EAHHLSKHAV TELVEGDSSR KIVEIICRTS 240 WLKSENHCGR IERVLKVHNM QKTLARFEEY REMVKIKASK LQKKHPRCLA DGNELLRFYG 300 TTLACSLGLN GSSSLCQYER CCVCRIIRNG FSSNKEELKG GIGVFTTSTS GRAFESIEIL 360 GHDPSLRKAL IVCRVIAGRV HRPLENIQEM AGQTGFDSLA GKVGLYSNIE ELYLLNPRAL 420 LPCFVVVCKP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.11193 | 0.0 | pod| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj3g3v1618350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027355460.1 | 0.0 | uncharacterized protein LOC113865239 | ||||
TrEMBL | A0A151SFE5 | 0.0 | A0A151SFE5_CAJCA; Uncharacterized protein | ||||
STRING | GLYMA06G41530.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4983 | 10 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27240.1 | 1e-170 | C2H2 family protein |